PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do010421.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Protein Properties

Length: 299aa MW: 33698.6 Da PI: 9.3628

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010421.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38	3e-12	196	287	1	93
EEEE-..-HHHHTT-E.......E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrl.......vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +t+s+v+ +l lp +f++++ + +++ t+tl de+ + + + ++ + l++GW++F +++L +gD +vF+l++r++f Do010421.1 196 FVKPMTQSHVTGGFWLvkqwmlsGLPTPFCRKYL-P-KRDETITLVDEEDDESDTLY--LARKMG--LSAGWRGFSIEHKLVDGDCLVFQLVERTKF-- 286 788888999988866655555668*******5.3.35669*9999999888..444433..9*********************998887.. PP E CS B3 93 v 93 + Do010421.1 287 K 287 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.22E-18	189	292	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.3E-16	191	290	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.26E-23	194	292	No hit	No description
SMART	SM01019	8.6E-11	196	294	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-9	196	287	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.474	220	294	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MTVPIPTNAP DATGSWTGCA NPPVPFPLGA PPFLSSAPPP CLLCSSHSIR LPKQIEMGKA 60 QRKEMAEAVS YEEQRRRQVE ANKRKLEELQ LHHLSAAVRE AAAKPSPAKK RKARVPRDAA 120 AADAEPLRRS GRVANLPEKP KYREEVLDVG RKVRRTYGSG RKDLANRVYA TDEERSHTIS 180 KAEELEDELG SRFPIFVKPM TQSHVTGGFW LVKQWMLSGL PTPFCRKYLP KRDETITLVD 240 EEDDESDTLY LARKMGLSAG WRGFSIEHKL VDGDCLVFQL VERTKFKVSE IRFAYQECL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010421.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	1e-146	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-116	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1E5W153	0.0	A0A1E5W153_9POAL; B3 domain-containing protein
STRING	Si014404m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-54	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]