PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 43846.2 Da PI: 5.9531 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 17 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r +++g+Wv+eIr+p++ ++r++lg+f tae+Aa a++ a+++l+g Do010196.1 17 PDYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 66 68****6..678*********843...5*************************98 PP | |||||||
2 | AP2 | 52.8 | 1e-16 | 247 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g r+r +lg+f tae+Aa+a++ a+++l+g Do010196.1 247 PVYKGVRSRN-PGRWVCEVREP--HG-RQRLWLGTFETAEMAARAHDVAALALRG 297 68****9666.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-9 | 17 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-25 | 17 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-28 | 18 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 18 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-30 | 18 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-18 | 19 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-12 | 247 | 297 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-29 | 248 | 307 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.47 | 248 | 305 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 248 | 306 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-26 | 248 | 311 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.00E-25 | 249 | 307 | No hit | No description |
PRINTS | PR00367 | 2.7E-7 | 249 | 260 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 271 | 287 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSSDHGGPAS PRSGKHPDYR GIRSRSGKWV SEIREPRKTR RIWLGTFPTA EMAAVAYDVA 60 ARALRGPDAA LNFPDLAASR PAPVSTSADD IRAAAAEAAA ALQEPDRRSL ARGGGAPGRG 120 NAPGAAGGSG AAQQQAGGSS GAAAQQEGAG SSQYFLDEEA LFQTPQYLRN MAAGMMMSPP 180 RLGRNSSDDS PDPSDGYGGY YTSSGTPSPP AAGDGGGGGG EDAYMTVSSA PPKRRAGRTK 240 FKETRHPVYK GVRSRNPGRW VCEVREPHGR QRLWLGTFET AEMAARAHDV AALALRGRGA 300 CLNFADSPRV LRVPPQGAGH DEIRRAAVEA AELFRPQPGE HNAGGSEAAA AAVGAPDAQG 360 SGGLGGGDFA YYPVDDGLEF EMQGYLDMSQ GMLIDPPPAN AGQSAWIDDE YDCEVSLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 15 | 74 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956044 | 0.0 | EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976544.1 | 1e-126 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | A2XWL6 | 1e-105 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-105 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | K3Y9W3 | 1e-125 | K3Y9W3_SETIT; Uncharacterized protein | ||||
STRING | Si011005m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-35 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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