PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009280.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 301aa    MW: 31746.8 Da    PI: 6.7098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009280.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd+ll+d+v+  G+gtW+  ++  g++R++k+c++rw +yl
       Do009280.1 14 KGPWAPEEDKLLIDYVQANGPGTWRMLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.72e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+  ++++++  G++ W+ Ia+ ++ gRt++++k++w+++l
       Do009280.1  67 RGPFTAEEHSSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.113961IPR017930Myb domain
SuperFamilySSF466898.44E-3011108IPR009057Homeodomain-like
SMARTSM007177.2E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001675.46E-91661No hitNo description
PROSITE profilePS5129426.32262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2665116IPR009057Homeodomain-like
SMARTSM007179.3E-1566114IPR001005SANT/Myb domain
PfamPF002494.0E-1467112IPR001005SANT/Myb domain
CDDcd001673.03E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRTPCCDSK GIKKGPWAPE EDKLLIDYVQ ANGPGTWRML PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGPF TAEEHSSILQ LHAIVGNKWS MIAAQLPGRT DNEIKNYWNT HLKKQLRQEA  120
VAGADAAAAA QQLAVVAVAS SCPAARHMAQ WETARLEAEA RLSLLSSTAT TNTSAPTASS  180
SSSTAAVHAA PDIFLRLWNS EVGDSFRASS VLQGHGVHSP AVSAAAAGSL PALLPAPGGA  240
SGDDSSAAST IGPEAAADDY QAFLDLAVEE FALLHGRLGA FSSFPPADVL AEVSCLFTPF  300
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-28141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-116AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661372.11e-151putative homeodomain-like transcription factor superfamily protein isoform X1
TrEMBLA0A1E5W1730.0A0A1E5W173_9POAL; Transcription factor MYB39
STRINGPavir.Gb00736.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-72myb domain protein 17