PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009070.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 356aa    MW: 38122.6 Da    PI: 6.7551
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009070.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.4e-27125185259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+ d  v+++tY+geH+++
  Do009070.1 125 DDGFSWRKYGQKDILGAKFPRGYYRCTYRtaqGCSATKQVQRSDADLCVFDVTYQGEHTCH 185
                 8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-27117186IPR003657WRKY domain
PROSITE profilePS5081123.055119182IPR003657WRKY domain
SuperFamilySSF1182903.53E-24123186IPR003657WRKY domain
SMARTSM007741.7E-39124186IPR003657WRKY domain
PfamPF031065.4E-26125185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQDGAGAEGG IQLLLXILAD GEEQARQLGE LAXDPRSGAE HYRGAARRLQ CTLGKAVAVA  60
KAVEAASAGS SRGTDRSDSP RSADESSGGT AAVEERQNLC KRRKGLPRWT AKFRVPDANL  120
EATPDDGFSW RKYGQKDILG AKFPRGYYRC TYRTAQGCSA TKQVQRSDAD LCVFDVTYQG  180
EHTCHQKQRH AAAVTARGGG SQSPPPPQDP SMQLLMGFRD ALKVETETIL QDHDYYDHGP  240
ASAPAAPFSF PSAVPFHHHH HAAGEAPVAF SPPGSGYFSA PPPHHCPAVV GSYDAYDYEA  300
RVRGGAESSE LGEVVSRATT TAPVAGFDYS SLYHHAEVDP HLPFAPFGGP SHGPYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-201261831875Disease resistance protein RRS1
5w3x_D2e-201261831875Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.10.0probable WRKY transcription factor 53
TrEMBLA0A1E5W0A10.0A0A1E5W0A1_9POAL; Putative WRKY transcription factor 53
STRINGSi008812m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-37WRKY family protein