PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009061.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 1019aa    MW: 108802 Da    PI: 5.5691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009061.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07920969147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+++T +E e lv+av++ G+g+W+++  +     ++Rt  ++k++w ++
       Do009061.1 920 RMPFTVDEVEALVEAVELIGTGRWRAVKMHAFdhvEHRTYVDLKDKWKTL 969
                      789************************999989999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF034781.2E-4339386IPR005174Domain unknown function DUF295
SuperFamilySSF542363.16E-5729800IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.376915974IPR017930Myb domain
SMARTSM007171.6E-7919972IPR001005SANT/Myb domain
PfamPF002491.9E-5920969IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10920970IPR009057Homeodomain-like
CDDcd116609.21E-16922971No hitNo description
SuperFamilySSF466891.64E-159221002IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MSGGEVAGMP AGADPSPPWA DLEPGIVSTI ATFCALGDYA SCRAVCGAWR SALPPPLSRP  60
LAVLPADDAA GHPVSLVACS LHARRWARLL LHGGGLHQPT RIRADSPDCR CVGASRDGWV  120
ALVAGDAAAP KGPLLFNPFT GEEIPLDGSL YQPTHEPAPK IVFSPGPTPR DFTAVSLCRP  180
GVVAVQRASE YCSYTEDTGP LLDGVALVDV AYGSDDDGKV YCLASDGQVH VLHLTRRSRV  240
GRRMPPMEVG PLPRLPVGAD GFPPPYDVIS QYADAKNLVL CDGELYQIWR RPRGAGSVTV  300
DAPPGGGARW IHVFEGDVFV LRYDPGTWLS SCWTVADGKD LRGNAVFVGM NDAAVVRGKG  360
VSANSVYYWN GPRGEGGDYE PVVYNMETGA SVRWPAVSTG GASSPVWYFL PATGGVSPRV  420
EAETTGVEAT SGEEATSAEE GEEEHSAHCL KKTMTSLDKD DGCGVCIPSP SVKTSCGKRS  480
TRKKKDEMCA FDLLATVAGT LLEDQGNSAN VPNPSGAAKA KGKKAVKEEP YDENLPLKNM  540
AMEKDRCTGC VVGSGGICAF PRQANNCSAE NSSTRKEAGS ALESLTVKSN MLARDSLVSC  600
TRPCETSCGL GIIPEFGAQG ICHPGSSISA EAEQVHLAEP KVVGRQDDGH AVALHSLLDS  660
VDLDGRPPAL VSSDSSTCVP LCSHDKEHQT SSLCRGEVQC TADRYDDENS SGCTHPSTTG  720
DKGYKPQFLV KLRIKSFNIP ELFINVPENA TIGLLKRTVM DVVNTIMKGG LRVGVLLQGK  780
DIQDDNKTLR QAGICHDKKL NNIDFTLECE GGQDSPSGAI IPEQMDLLSA DVVEPLARMK  840
CEGPFPETGG DDNKQRTPPY RSRSLSDLYS VVQPVEMASQ DTSASSQAII PVAPSDDGAL  900
AIVPLCSKPR RPEIGKRRTR MPFTVDEVEA LVEAVELIGT GRWRAVKMHA FDHVEHRTYV  960
DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SQQQAKLQDK PPVPAICSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-4890410111108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518524KAKGKKA
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400777.10.0telomere-binding protein 1-like isoform X2
SwissprotQ9LL451e-117TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A1E5W0G90.0A0A1E5W0G9_9POAL; Telomere-binding protein 1
STRINGPavir.J14051.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-66TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]