PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009030.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 306aa    MW: 32676.2 Da    PI: 6.0767
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009030.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.34.3e-25133194159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC ++k+v+r++ dp + +++Y+g H++ 
  Do009030.1 133 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhsqGCLATKHVQRADGDPLLHDVVYHGVHTCA 194
                 58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-26120195IPR003657WRKY domain
SuperFamilySSF1182903.27E-24126194IPR003657WRKY domain
PROSITE profilePS5081121.069128191IPR003657WRKY domain
SMARTSM007741.1E-37133195IPR003657WRKY domain
PfamPF031061.3E-23134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDVCGGGGGE RRALASELAQ VQAMVRELEA CVDQDSPAAA REVIRELASS VDRSIHIAMS  60
GGWTGPDSPG TGDGSPRSDG AQHPAALGGN AQSKRRQVER SISVSSLHRA TEKGTPCVRR  120
QVRVTSVQDM ASLDDGLSWR KYGQKDILGA KYPRAYFRCT HRHSQGCLAT KHVQRADGDP  180
LLHDVVYHGV HTCAQAAHPT AEQLRQQLQP EGHTGQEQGS PLALEAEGLQ AELEPMTPYS  240
FASAAPSAGA DFGGSFALLS PTGLEWQLRS SHAAGGLGVG MGFEAQFEEF FTNPTDPFQW  300
DLYAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20132193768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586191e-124KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.11e-148probable WRKY transcription factor 30
TrEMBLA0A1E5UM370.0A0A1E5UM37_9POAL; Putative WRKY transcription factor 30
STRINGPavir.J03334.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-30WRKY family protein