PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009023.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRF
Protein Properties Length: 378aa    MW: 38288.8 Da    PI: 9.1983
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009023.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.65.1e-24216259245
         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Do009023.1 216 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 259
                 69***************************************986 PP
2QLQ58.81.5e-20148184137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++
  Do009023.1 148 GPFTPSQWIELEHQALIYKYLAANSPIPHSLLVPIRR 184
                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11148184IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.9E-15149183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.914149184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65215259IPR014977WRC domain
PfamPF088792.8E-20217258IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELGGVVMDA GGGGAELGLL GGGSSRLLKH GRGNAAAGTG GEEHGWGGGG RAAKQARTAA  60
DVAEAAKAAA PFLLGSCSPG HGGEQMLSFS SNVAASSCAS TAAVAAAAAA VAADGAMPLY  120
YGTPASCSGL SSVSLSSSMQ GAMTRMRGPF TPSQWIELEH QALIYKYLAA NSPIPHSLLV  180
PIRRSIASSP YPPSYFGTST LGWGSFQLGY SGNADLEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHMNRGR HRSRKHVEGQ PGHAAKATSA AVAAAAATQP AALAASGAGA TAAGLTSQHQ  300
QPLKSYAAGA TDPCSLQYNS PGMESSPVGV LQKTTFGSVS SSTGSSPRME NHGAFDGASN  360
LRDDLGSIVV SHPSIRLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9736470.0EU973647.1 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795429.11e-154growth-regulating factor 6-like
SwissprotQ6AWY31e-112GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A1E5WAN20.0A0A1E5WAN2_9POAL; Growth-regulating factor 6
STRINGSi034822m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.18e-50growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]