PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008886.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 514aa MW: 56872.3 Da PI: 8.6933

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008886.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.1	1.2e-08	35	63	2	30
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel 30 ppG+rF Pt++el+++yL++k+eg++ +l Do008886.1 35 PPGYRFTPTEQELIMDYLRNKIEGRQPPL 63 9***********************99666 PP
2	NAM	35.5	3e-11	104	149	2	48
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 ppG+rF Pt++el+ +yL++k+eg++ +l +v++ev i++++P +L Do008886.1 104 PPGYRFTPTEQELIIDYLRNKIEGRQPPL-TVVNEVAILDWQPGSLV 149 9***********************999.99*********9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-9	26	64	IPR003441	NAC domain
Pfam	PF02365	3.1E-6	35	86	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-11	95	151	IPR003441	NAC domain
Pfam	PF02365	1.7E-5	104	142	IPR003441	NAC domain
Pfam	PF03151	1.6E-9	309	479	IPR004853	Sugar phosphate transporter domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
LAQQVQFPPG YHFVPLEVTA IRQQQQELAQ QLQFPPGYRF TPTEQELIMD YLRNKIEGRQ 60 PPLAVEQHEL AQPLQFPPGY RFVPLEVAAV RQQQQELAQQ LQFPPGYRFT PTEQELIIDY 120 LRNKIEGRQP PLTVVNEVAI LDWQPGSLVE EVLTELIQPP GPHCSSLGRT PPANGTIRRF 180 LVDRKNSGSL PFLISCSALT PSNSSFIEVS SFAASEFWIY IRFSAVSFQV LGHMKTVFAL 240 FLGFHFFAKE GLNLQVVLGM VLAVPGMIWY GNASAKPAGK ERCSVLTIAK LCMIPASCLL 300 EVVFDHVHYS RDTKLSIMVV LIGVAVCTVT DVSVNAKGLI ASVIAVWSTA LQQYYVHFLQ 360 RKYSLNSFNL LGHTAPAQAG SLLLVGPFVD FLLTGKRVDH FNFSSLSLFF LSLSCFIAIG 420 VNLSQFICIG RFSAVSFQVL GHMKTVLVLS LGFLFFGKEG LNLQVVLGMV LAVLGMIWYG 480 NASAKPGGKE RRSVLPVRSL SFKGSSEEKA GAEK

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

LAQQVQFPPG YHFVPLEVTA IRQQQQELAQ QLQFPPGYRF TPTEQELIMD YLRNKIEGRQ  60
PPLAVEQHEL AQPLQFPPGY RFVPLEVAAV RQQQQELAQQ LQFPPGYRFT PTEQELIIDY  120
LRNKIEGRQP PLTVVNEVAI LDWQPGSLVE EVLTELIQPP GPHCSSLGRT PPANGTIRRF  180
LVDRKNSGSL PFLISCSALT PSNSSFIEVS SFAASEFWIY IRFSAVSFQV LGHMKTVFAL  240
FLGFHFFAKE GLNLQVVLGM VLAVPGMIWY GNASAKPAGK ERCSVLTIAK LCMIPASCLL  300
EVVFDHVHYS RDTKLSIMVV LIGVAVCTVT DVSVNAKGLI ASVIAVWSTA LQQYYVHFLQ  360
RKYSLNSFNL LGHTAPAQAG SLLLVGPFVD FLLTGKRVDH FNFSSLSLFF LSLSCFIAIG  420
VNLSQFICIG RFSAVSFQVL GHMKTVLVLS LGFLFFGKEG LNLQVVLGMV LAVLGMIWYG  480
NASAKPGGKE RRSVLPVRSL SFKGSSEEKA GAEK

Functional Description ? help Back to Top
Source	Description
UniProt	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode. {ECO:0000269\|PubMed:16831428, ECO:0000269\|PubMed:25053812}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008886.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041876	0.0	BT041876.2 Zea mays full-length cDNA clone ZM_BFb0071O24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982861.1	1e-155	UDP-rhamnose/UDP-galactose transporter 5
Swissprot	Q8RWW7	1e-116	URGT4_ARATH; UDP-rhamnose/UDP-galactose transporter 4
TrEMBL	K4ACE1	1e-154	K4ACE1_SETIT; Uncharacterized protein
STRING	Si036548m	1e-154	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	2e-07	NTM1-like 8

Publications ? help Back to Top
Knappe S,Flügge UI,Fischer K Analysis of the plastidic phosphate translocator gene family in Arabidopsis and identification of new phosphate translocator-homologous transporters, classified by their putative substrate-binding site. Plant Physiol., 2003. 131(3): p. 1178-90 [PMID:12644669] Bakker H, et al. Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line. Glycobiology, 2005. 15(2): p. 193-201 [PMID:15456736] Rollwitz I,Santaella M,Hille D,Flügge UI,Fischer K Characterization of AtNST-KT1, a novel UDP-galactose transporter from Arabidopsis thaliana. FEBS Lett., 2006. 580(17): p. 4246-51 [PMID:16831428] Rautengarten C, et al. The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(31): p. 11563-8 [PMID:25053812] Ebert B, et al. Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis. Plant Cell, 2015. 27(4): p. 1218-27 [PMID:25804536]