PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008764.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 856aa MW: 94848.5 Da PI: 6.1

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008764.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.2e-09	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + Do008764.1 59 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 101 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-10	52	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-5	53	104	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.167	55	106	IPR017884	SANT domain
SMART	SM00717	5.1E-7	56	104	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-6	59	102	No hit	No description
Pfam	PF00249	1.1E-6	59	101	IPR001005	SANT/Myb domain
Pfam	PF01248	4.3E-16	771	839	IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45
Gene3D	G3DSA:3.30.1330.30	5.6E-35	773	855	IPR029064	50S ribosomal protein L30e-like
SuperFamily	SSF55315	3.14E-21	774	854	IPR029064	50S ribosomal protein L30e-like
PRINTS	PR00881	1.6E-10	782	795	IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family
PRINTS	PR00881	1.6E-10	798	808	IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family
PROSITE pattern	PS01082	0	801	818	IPR004037	Ribosomal protein L7Ae conserved site
PRINTS	PR00881	1.6E-10	808	822	IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042254	Biological Process	ribosome biogenesis
GO:0030529	Cellular Component	intracellular ribonucleoprotein complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MEKEVREELN PLLQTIEFAP STSDPNQKLD SAQPSDPNQK PGSFFVNYFS KKPTRQWAAW 60 TRQEEENFFN ALRQVGKNFE KITHRVQSKN KDQVRHYYYR LVRRMKKLLG PGFSLDAKNS 120 KDTIAAMLRW WSLLEKFSCS ASKLHLKPRR FKTFVEALGN QLLKDRNKSR RKCPRVDMCL 180 SSPSPIVSKT PGNEPFPVKF LPVDAQNGSR VASPKGGAFF KRMTETNSSK SGATKGDLSA 240 TRTVKQKRRA GGVVAAAAYK KWERAAMAGV SLVADAAEEL ERNTINPGML CNVDARTLTS 300 SSDKLSTVDG ISTSHMKEAD SQAPAKLKLQ LFPINEATRK ALEKDEHNPH LELTLSSRKK 360 ISSVLEHLNR KWGNSNIASG ELILFPYCAH QEDLATYQRW TTRDTVAVAD VFLSVNSPSV 420 FRLRYGWFSL VELEAGVSEI SLTHFENCMI PEDILVKSPS GDKACLQKDG TLLSNSIHEQ 480 YPRSSKDQSA LLHITPSSTG KNTELPEQPT NAPPSQFGSQ KQVQVPVTQA FEDDEGMNSA 540 AISEGEWADT LTDISVGYLL TEASKGAHLD CIGTSSVKNA LFLDNPCSYD SFDAAVALHV 600 SRFQASEQPA PHAPHSTIWG AEETCDEFSF NLSASRKQEG SNTPSSSSPD TDNEAHQLNS 660 EGFRGFLQDL TGEAAADNPY NDDDAKDTEE FCAKSPPRND DTNELKDQSL PDIYWPDSLG 720 PLDLDIPPVR YQADDLLIGD SQNSWNRMMA NSLDAFRNLS FFSSMDKNDS IPSIMMGISE 780 FVVMAADTEP LEILLHLPLL AEDKNVPYVF VPSKQALGRA CGVTRPVIAC SVTSNEGSQL 840 KQPIQTLKDS IEKLLI

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MEKEVREELN PLLQTIEFAP STSDPNQKLD SAQPSDPNQK PGSFFVNYFS KKPTRQWAAW  60
TRQEEENFFN ALRQVGKNFE KITHRVQSKN KDQVRHYYYR LVRRMKKLLG PGFSLDAKNS  120
KDTIAAMLRW WSLLEKFSCS ASKLHLKPRR FKTFVEALGN QLLKDRNKSR RKCPRVDMCL  180
SSPSPIVSKT PGNEPFPVKF LPVDAQNGSR VASPKGGAFF KRMTETNSSK SGATKGDLSA  240
TRTVKQKRRA GGVVAAAAYK KWERAAMAGV SLVADAAEEL ERNTINPGML CNVDARTLTS  300
SSDKLSTVDG ISTSHMKEAD SQAPAKLKLQ LFPINEATRK ALEKDEHNPH LELTLSSRKK  360
ISSVLEHLNR KWGNSNIASG ELILFPYCAH QEDLATYQRW TTRDTVAVAD VFLSVNSPSV  420
FRLRYGWFSL VELEAGVSEI SLTHFENCMI PEDILVKSPS GDKACLQKDG TLLSNSIHEQ  480
YPRSSKDQSA LLHITPSSTG KNTELPEQPT NAPPSQFGSQ KQVQVPVTQA FEDDEGMNSA  540
AISEGEWADT LTDISVGYLL TEASKGAHLD CIGTSSVKNA LFLDNPCSYD SFDAAVALHV  600
SRFQASEQPA PHAPHSTIWG AEETCDEFSF NLSASRKQEG SNTPSSSSPD TDNEAHQLNS  660
EGFRGFLQDL TGEAAADNPY NDDDAKDTEE FCAKSPPRND DTNELKDQSL PDIYWPDSLG  720
PLDLDIPPVR YQADDLLIGD SQNSWNRMMA NSLDAFRNLS FFSSMDKNDS IPSIMMGISE  780
FVVMAADTEP LEILLHLPLL AEDKNVPYVF VPSKQALGRA CGVTRPVIAC SVTSNEGSQL  840
KQPIQTLKDS IEKLLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1e7k_A	1e-33	768	856	40	128	15.5 KD RNA BINDING PROTEIN
1e7k_B	1e-33	768	856	40	128	15.5 KD RNA BINDING PROTEIN
2jnb_A	2e-33	768	856	56	144	NHP2-like protein 1
2ozb_A	1e-33	768	856	42	130	U4/U6.U5 tri-snRNP 15.5 kDa protein
2ozb_D	1e-33	768	856	42	130	U4/U6.U5 tri-snRNP 15.5 kDa protein
3jcr_I	1e-33	768	856	40	128	hSnu13
3siu_A	1e-33	768	856	42	130	NHP2-like protein 1
3siu_D	1e-33	768	856	42	130	NHP2-like protein 1
3siv_A	1e-33	768	856	42	130	NHP2-like protein 1
3siv_D	1e-33	768	856	42	130	NHP2-like protein 1
3siv_G	1e-33	768	856	42	130	NHP2-like protein 1
3siv_J	1e-33	768	856	42	130	NHP2-like protein 1
5o9z_O	1e-33	768	856	40	128	NHP2-like protein 1
6ah0_M	1e-33	768	856	40	128	NHP2-like protein 1
6ahd_M	1e-33	768	856	40	128	NHP2-like protein 1
6qw6_4D	1e-33	768	856	40	128	NHP2-like protein 1
6qx9_4D	1e-33	768	856	40	128	NHP2-like protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008764.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728424	0.0	KJ728424.1 Zea mays clone pUT6729 MYB-related transcription factor (MYBR54) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796637.1	0.0	TSL-kinase interacting protein 1 isoform X1
Refseq	XP_025796638.1	0.0	TSL-kinase interacting protein 1 isoform X1
TrEMBL	A0A1E5WGA0	0.0	A0A1E5WGA0_9POAL; TSL-kinase interacting protein 1
STRING	Si034363m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5478	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-157	TSL-kinase interacting protein 1