PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008744.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 399aa    MW: 42377.2 Da    PI: 4.7098
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008744.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573941.5e-2983182297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                 lfqrlw+ee e+++L+G+ +f+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++   ++ a++g  ++f+++h+  i+++++ iW
  Do008744.1  83 LFQRLWTEEEELLILRGFHEFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVSAARvAAQGAAFAFRSAHEGAIYDVARHIW 181
                 79************************99877778***********************************9999889*********************** PP

      DUF573  97 g 97 
                 +
  Do008744.1 182 R 182
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-2684181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MADDDDPLTA AASSSAGDDD DEGTDTDASN SDLANHRDPP PPLTDATSAP PPPAASAAEP  60
TGAVPPPPPQ PQTQPQGEDS RRLFQRLWTE EEELLILRGF HEFTARRGTT FASHQYDTGP  120
FYEEIRRRLS FDFTKSQLIE KLRRLKKKYR VSAARVAAQG AAFAFRSAHE GAIYDVARHI  180
WRPAFRRRDG AGGPADASDE DDINPAAAAA AAAALPNATE DGGGGSASAP TPRGRGGRRV  240
RRRTAQELEA PALPATSALM LNDVVQEPLL VSVDNLAPAF APPPPVQVPV VSPMPATPSP  300
MPVTASGATE EVVRTILSPL LREFIGSVAV AGQTGLGLGM ELGSIGGFDV FGPGPNPGVP  360
GGEKWRQQQI LELEVYLKRI ELIREQVTAT LQELRSSEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-157BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-157JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967868.11e-168probable transcription factor At3g04930
TrEMBLA0A1E5W9N30.0A0A1E5W9N3_9POAL; Uncharacterized protein
STRINGSi005179m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-26DNA-binding storekeeper protein-related transcriptional regulator