PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008302.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 315aa    MW: 32936.4 Da    PI: 6.4238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008302.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33141198259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ dp+vv++tYeg+H h+
  Do008302.1 141 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSADPSVVITTYEGQHCHH 198
                 8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33125198IPR003657WRKY domain
SuperFamilySSF1182903.4E-28132199IPR003657WRKY domain
PROSITE profilePS5081130.021135200IPR003657WRKY domain
SMARTSM007742.4E-38140199IPR003657WRKY domain
PfamPF031061.0E-25141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGAAGDSTE GDGGDWPFAG ADAFAAEYSS VFAELGWPGG LAAGAGELPV LDLTEGAEPL  60
AELTQPEEIM APARSGDAAA SSSSSGDADG GDGDGAAPGS DDRKPAAETA GTKPASAKKG  120
LKRARQPRFA FMTKSEIDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTNSK CTVKKRVERS  180
SADPSVVITT YEGQHCHHIG SLFQRGGGGG AAAAHIQSAR AVTLAEQMSS FIPAQQLYNL  240
PPLHPQRSPS SETVVNPVST SLQHLNSGDE LRRTSYSPRV SMVQSTSTPS SVPPAISVEK  300
AGLLDDMVPH GVRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-26131199876Probable WRKY transcription factor 4
2lex_A5e-26131199876Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798563.11e-148probable WRKY transcription factor 57
SwissprotQ9C9831e-50WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A1E5W3W40.0A0A1E5W3W4_9POAL; Putative WRKY transcription factor 57
STRINGPavir.J37837.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-49WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]