PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008052.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 1157aa    MW: 129068 Da    PI: 6.2829
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008052.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.43.6e-55191362118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgkt++E+he+LK g+++vl+cyYah+een +fqrr+y
  Do008052.1  19 LKEaQHRWLRPAEICEILKNYRNFHIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTIKEAHERLKSGSIDVLHCYYAHGEENGNFQRRSY 117
                 45559********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 w+Lee++ +ivlvhylevk
  Do008052.1 118 WMLEEDFMHIVLVHYLEVK 136
                 ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.32115141IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038598.1E-4921135IPR005559CG-1 DNA-binding domain
CDDcd001023.06E-4424511No hitNo description
Gene3DG3DSA:2.60.40.105.3E-6425509IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.62E-17425510IPR014756Immunoglobulin E-set
PfamPF018335.3E-8428504IPR002909IPT domain
SuperFamilySSF484031.18E-15616720IPR020683Ankyrin repeat-containing domain
CDDcd002047.13E-12619717No hitNo description
Gene3DG3DSA:1.25.40.207.1E-16619723IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.923625657IPR002110Ankyrin repeat
PROSITE profilePS5029717.343625729IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.603658690IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-8830882IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075831853IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407832861IPR000048IQ motif, EF-hand binding site
PfamPF006120.0038833852IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56855879IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4857876IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    Send to blast
MAEARRYAIA PQLDIEQILK EAQHRWLRPA EICEILKNYR NFHIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTIKEAHER LKSGSIDVLH CYYAHGEENG NFQRRSYWML  120
EEDFMHIVLV HYLEVKGGKS SSRIRGHDDM LQAARTDSPL SQLPSQTTQG ESSLSGQASE  180
YEETESVYCH YGPKLSWPVF FCYPYLGNHQ GFPAIATTTD FYSHGQDALP VALNEPGLGI  240
TFNGADNQLD PSLLNGLVKP DQGVHIMPPP QITDPSKQFP FTEGPGIESF TFDEVYSNGL  300
SIKDADTIGT DEESLWQLPG AISSFPTEDG LQQNYRSLDE AINTLLKTQS SSLSDILKDS  360
FKKSDSFTRW MSKELCEVDD SQIKSSSGVY WSSEETGNSI EASSRDQLDQ FTVDPVLAQD  420
QLFSIFVFSP SWTYAGSKTR VLITGRFLNS DEVQRCKWSC MFGEVEVPAE ISGDGTLRCY  480
SPLHKPGRVP FYVTCSNRLA CSEIREFEFR PSDSQHMDGP GPHDAANKTY LQMRLDDLLS  540
LGQDEYQAMV SNPTKEMTDL SKKISSLMTD NDSWSELLKL AGDNELATDD KQDQFFEKRL  600
KEKLHTWLVH KTGDGGKGPS VLDEEGHGVL HLAAALGYDW AIRPTISAGV NINFRDAHGW  660
TALHWAAFCG RERTVVALIA LGAASGALTD PTPDFPTGST PADLASANGY KGISGFLAES  720
SLTSHLQTLN LKEAMGSHAS EISGLPGIGD VTERRASPLA GEGLLAGSMG DSLGAVRNAS  780
QAAARIYQVF RMQSFQRKQA VQYEDDNGAI SDDRALSLLS VKPSKPGQLD PLHAAATRIQ  840
NKFRGWKGRK EFLLIRQRIV KIQAHVRGHQ VRKHYRKIVW SVGIVEKVIL RWRRRGAGLR  900
GFRSTEGAVE GTSRSGSDVI QNKPAEDDYD FLQRGRKQTE ERLQKALARV KSMVQYPDAR  960
DQYKRILTAV TRLQESQAMQ EKMLESSTDM DEGFVMTEFK ELWDDDMPMP GFPPSRSPSP  1020
GRFEPLPPSP YAAAAMDAAP SAFMVLTGHL VLDELAVRPP KKWAKIQCAS KKAHGCGKHG  1080
EELVEDLSLW LSLFDGEDDL NSSLCIRMSD DALRSVQADL GISRSMVDAE GSVQIANQER  1140
LVLTLFLRRQ CCVKRAY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985392.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A1E5W7100.0A0A1E5W710_9POAL; Calmodulin-binding transcription activator 3
STRINGSi034076m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1