PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007910.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 629aa    MW: 67543.1 Da    PI: 6.2664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007910.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.22.6e-922196282374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaN 99 
                  +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++ +s e++  + l f+e+sP+  f+h++aN
  Do007910.1 219 AQLLLECARAVAAHDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRN-TSFESTRRTALkFQELSPWTSFGHVAAN 316
                 589************************************************************9888874.444444444446**************** PP

        GRAS 100 qaIleavege..............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                  aIle + ++               r+ i+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     +  ++e+++rL+kfA+ +gvpf+f++
  Do007910.1 317 GAILETFLEAaasaaaasssssqpPRLQILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQCVMREIAQRLEKFARLMGVPFSFRT 415
                 ****98866555666667777777789************************8889********9966557779999*********************** PP

        GRAS 181 lvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............sFlerfleale 262
                 +++  +l+dl+l+ L++++     ala+n+v +l  +   ++  +  rd++L  +++l+P+vv+vve++ad+  se             F++ f+e l+
  Do007910.1 416 VHHVgDLADLDLDGLDLREggaTTALAINCVNALRGVA--PGGARR-RDAFLASLRRLEPRVVTVVEEDADLvASEsdasseeanteaAFMKVFTEGLR 511
                 96656**************888889************8..555555.9*********************9996555899999****99*********** PP

        GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....... 354
                 ++sa +dsle ++p++s+er  +Er+  gr+iv++v+c  +e+ er+et ++W +r+++aGF+p+++s+++a+++++llr++  +g+++ e        
  Do007910.1 512 FFSAYMDSLEDSFPKTSNERLALERA-AGRAIVDLVSCPASESAERRETGASWARRMRSAGFSPLAFSDDVADDMRSLLRRYR-EGWSLREPgtdddaa 608
                 **************************.*******************************************************9.999*99666666665 PP

        GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                  + ++l Wk++p+v++SaWr
  Do007910.1 609 AAGVFLAWKEQPVVWTSAWR 628
                 77788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.242192602IPR005202Transcription factor GRAS
PfamPF035149.0E-90219628IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHHHPQAT SPDQQHHHQS PYSSSRSTSR STTSTGSRSS PPSHHTHNHH  60
YYSHSHSHYN SSNSSGSYYY YDPAVGSGSA GGGGGYCYDH HQPAPYQEEC GNDHGFYMDE  120
DFSSSSSSRH FHQSSSSSRA PPAPATQPPP SSPAPTPTQP PSTSSAGGHA GGLFEAADFS  180
FPHVDIDLDF SSPVSSSAGA AGGTAASSSG GGGAGRWAAQ LLLECARAVA AHDSQRVQQL  240
MWMLNELASP YGDVDQKLAS YFLQGLFARL TTSGPRTLRT LAAASDRNTS FESTRRTALK  300
FQELSPWTSF GHVAANGAIL ETFLEAAASA AAASSSSSQP PRLQILDLSN TFCTQWPTLL  360
EALATRSSDD TPHLSITTVV PTAAPSAAAQ CVMREIAQRL EKFARLMGVP FSFRTVHHVG  420
DLADLDLDGL DLREGGATTA LAINCVNALR GVAPGGARRR DAFLASLRRL EPRVVTVVEE  480
DADLVASESD ASSEEANTEA AFMKVFTEGL RFFSAYMDSL EDSFPKTSNE RLALERAAGR  540
AIVDLVSCPA SESAERRETG ASWARRMRSA GFSPLAFSDD VADDMRSLLR RYREGWSLRE  600
PGTDDDAAAA GVFLAWKEQP VVWTSAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15321662985474Protein SHORT-ROOT
5b3h_B1e-15421662931420Protein SHORT-ROOT
5b3h_E1e-15421662931420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796633.10.0protein SHORT-ROOT 2-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A1E5WBK00.0A0A1E5WBK0_9POAL; Protein SHORT-ROOT 2
STRINGPavir.Ia02979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-121GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]