PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007875.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 575aa    MW: 60291.3 Da    PI: 6.3864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007875.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047107124219
                 EETTTTEEESSHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                 +C++Cg+ F++++++ +H
  Do007875.1 107 VCKNCGEEFTSWELFLQH 124
                 7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-52450No hitNo description
PROSITE profilePS501579.642754IPR007087Zinc finger, C2H2
SMARTSM003550.962749IPR015880Zinc finger, C2H2-like
PfamPF139120.00212849IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PfamPF139121.4E-9272297IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-8272295No hitNo description
SMARTSM003550.13273295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221273300IPR007087Zinc finger, C2H2
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-8383410No hitNo description
SMARTSM003553.7388410IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11388411IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182388410IPR007087Zinc finger, C2H2
PROSITE patternPS000280390410IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MCESSSLMPP SPSPPRPPGR QPPEYKHFCR VCNKGFTCGS ALGGHMRAHG ASDVDGFGAD  60
DDSALGDEAS ARCRGSDDQW DAVGTSSATH AYALRANSNR LVRSCQVCKN CGEEFTSWEL  120
FLQHGKCNSE EEEVADGSCS LRSSSPPSDA DGEEDPAVAA AWSKGKRSRR VKLMIGGEEH  180
SPVARSRRDT SGEEEDLANC LVMLSSSNIE HAKVIETDQP KPCASVGKES GGAPPLQLQP  240
ISFFLPASEP VVALPSVVAA TPQYISPASR NVFECKACKK VFTSHQALGG HRASHKKVKG  300
CFAAKFESNA SEPARHSVAG DPNNITGKGA VDEVIAGVNT DAKASVYAAT TDADTNAGTS  360
EAVASLSMSL APIGHSVAAP CKKNTKMHEC SVCHRLFTSG QALGGHKRCH WLTSSTADPC  420
NTVANMIPPL TEDLVGVVRH QLTLRPMVEA PEPALDLTIA ANPAALAAAM ARPEAGSSSF  480
RLDTLAPVHL QPLAVEVPST ASHRKKTTTP TSSHHATDTV AEEDEADSTS VKRAKLSDLK  540
AVVSMDGEPT GPWLQVGIGS SSAGGDDKSR ESAIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A1E5WGG60.0A0A1E5WGG6_9POAL; Uncharacterized protein
STRINGSi012008m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-19C2H2-like zinc finger protein