PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 23990.4 Da PI: 10.5848 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.1 | 1.5e-31 | 21 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p+ +a+e e yfF+ r +++ ++rat+sg+Wk gk+k+v+ Do007526.1 21 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSIDPWDIPA--DASEGEKYFFAVRPAGVVgggcSKSGATRATASGRWKPAGKEKPVVL 116 79****************************.8899999***********4..4567799*****999887555556688999****************9 PP NAM 95 k.....kgelvglkktLvfy....kgrapkge.....ktdWvmheyrl 128 ++ lvg+k+ ++f k k+ + Wvmheyrl Do007526.1 117 PrpcggGSLLVGVKRAMTFTprrnK----KAAtsaslAAGWVMHEYRL 160 9899877777**********65431....33222233789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-40 | 17 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.444 | 21 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-21 | 22 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MESAAPVLVR HAGGVAALRQ LPPGFRFRPT DEELVVQYLR RKAFGVPLPA AVIPVVRDLY 60 SIDPWDIPAD ASEGEKYFFA VRPAGVVGGG CSKSGATRAT ASGRWKPAGK EKPVVLPRPC 120 GGGSLLVGVK RAMTFTPRRN KKAATSASLA AGWVMHEYRL AAPLHKNGCS LTQAEGEWVV 180 CRVFQRSNRP RRRAVPAGNG HAASPSSSSA ASCVTDGSGS DQEEVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-29 | 21 | 188 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-29 | 21 | 188 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-29 | 21 | 188 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-29 | 21 | 188 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-29 | 21 | 188 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-29 | 21 | 188 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-29 | 21 | 188 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086571 | 3e-73 | BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds. | |||
GenBank | DQ245491 | 3e-73 | DQ245491.1 Zea mays clone 16115 mRNA sequence. | |||
GenBank | DQ246095 | 3e-73 | DQ246095.1 Zea mays clone 16151 mRNA sequence. | |||
GenBank | EU970906 | 3e-73 | EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974022.1 | 1e-124 | NAC domain-containing protein 18 | ||||
TrEMBL | K3YJI9 | 1e-122 | K3YJI9_SETIT; Uncharacterized protein | ||||
STRING | Si014408m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-38 | NAC domain containing protein 41 |