PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19551.1 Da PI: 10.2906 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.8 | 1.3e-17 | 7 | 63 | 1 | 59 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redams 59 +C aCk+lrrkC+++Cv yfp ++p+kfa vh++FGasnv+kll++lp+ + r+ a+ Do007233.1 7 PCGACKLLRRKCTQGCV---YFPPDNPAKFADVHRVFGASNVSKLLSELPQGTqRQLAAL 63 7***************9...7999*************************98773555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.214 | 6 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-18 | 7 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSSSSSPCGA CKLLRRKCTQ GCVYFPPDNP AKFADVHRVF GASNVSKLLS ELPQGTQRQL 60 AALAAAMEVT REQQDLMMSQ AAAYAPGSSA GATVADAVPY EGGFLFQQQQ PSQAQTAVAL 120 TSIESSLSGD QALTELLSRQ HQRRWSGNVV QDHLRSRVRR GGASPECRRR RCRGSPSRKV 180 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-20 | 4 | 75 | 8 | 81 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-20 | 4 | 75 | 8 | 81 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007233.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5URT6 | 1e-129 | A0A1E5URT6_9POAL; Uncharacterized protein | ||||
STRING | TRIUR3_06488-P1 | 4e-26 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-23 | ASYMMETRIC LEAVES 2-like 1 |