PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007068.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 641aa    MW: 69721.6 Da    PI: 4.252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007068.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.5e-49171531128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgk 88 
                 l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat +gyWk+tgk
  Do007068.1  17 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKIAgagaggrggPGNRTNRATPRGYWKTTGK 114
                 579***************************.99***************5448999999***********99877777665577**************** PP

         NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 d+ev++ +g+ vg+kktLvf+ grapkge+++Wvmheyrl
  Do007068.1 115 DREVYH-RGKPVGMKKTLVFHAGRAPKGERSNWVMHEYRL 153
                 ******.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5514171IPR003441NAC domain
PROSITE profilePS5100555.317171IPR003441NAC domain
PfamPF023651.0E-2619153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MSSLSPPDSS PPAEVPLAPG FRFHPTDEEL VSYYLRRRVL GRRLRVDAIA EVDLYRLEPW  60
DLPSLSRIRS RDAQWYFFAR LDRKIAGAGA GGRGGPGNRT NRATPRGYWK TTGKDREVYH  120
RGKPVGMKKT LVFHAGRAPK GERSNWVMHE YRLLEADGPQ DLHVVCRIFQ KHGSGPQNGA  180
QYGAPYMEEE WEEEDDAIEN APPSGTSAGM AAITCTVDEE SNEEDENGYC KTNELAQAHG  240
MLNSTEIAPL QAQGSKDTSD GSCADGVVSL EEILQEPLSN VNAESIGGSE GQNATDDNFS  300
VDDILSACPR EDDDYVGQDG TLNESYPADG DCTHWPLRAY SNQNYANGTL SALSAEEFFD  360
TPNDTSGNAY SEYQQADGFP APQQVDGSMV FYDAPSDYNL VDGNDDFVYL NDLLNEPFGN  420
ESLFDGDDMM AYFDATENDF KYDISSSAQG SNYPHADMTS NFAQKGDNKD KLTFDGISKA  480
SGANAQYGAS SSGSHEDLYP DTAVPDDTAD KTFGKRLASM LGSIPAPPAM ASEFPPATGK  540
TVGALSAVSP SSIRVTAGII QLDGLTFTGV SERWPLPKNG DFSLLLSFSV ESDVSSKPVG  600
FEQATRMSTV PMVLRSGMYL FFVSAMILLL SYKIGSCIYS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-431315311140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A1E5WKH40.0A0A1E5WKH4_9POAL; NAC domain-containing protein 53
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.18e-61NAC domain containing protein 53