PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007042.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 884aa    MW: 100369 Da    PI: 6.5386
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007042.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.45.6e-1999204290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                  Y++YA+++GF+ ++++ ++   +g  +++tf+C+  gk++                       +ek++r+ a ++tgCka+l ++ ++ d++w+v+++
  Do007042.1  99 LYKAYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTYGGKSRAGAAPsdvpgaryplrskggaaaQEKKSRRGAAEKTGCKAMLIIRDKRvDDRWKVESV 195
                 6***********999998887..7888************999887799***************999999999***************999********* PP

        FAR1  82 eleHnHela 90 
                 eleHnH+++
  Do007042.1 196 ELEHNHPCT 204
                 ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1699204IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.891510546IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011521548IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MGEGSKGRAT RSHNPSLESD EEEARRVKEE IADDLNGEPA EEDDEDEEVV VEDEEVVIPS  60
DDEEDGGGGD DGFVPRTLVE ALVPRAGTVF DSVDEAFALY KAYAYRTGFH AVRRTCHNYE  120
GLRYRSTFTC TYGGKSRAGA APSDVPGARY PLRSKGGAAA QEKKSRRGAA EKTGCKAMLI  180
IRDKRVDDRW KVESVELEHN HPCTPDMVRF LKAYREMPES AKKKAKITDE MDEMVEKSLS  240
EIAETRKFPT RPKRGASGGA AVGGSHRFSR FESFVQRFGE DDLTALRKFI EAMQRKKPNF  300
IHSWDLERES RVKNFFWTDS RAQAQYRYFG DVITLDVLYL QHSRATLPLA TLLGVNNHGH  360
LVLLGCGLLS GDSKENYVCC RKQWAPGYVN HSFWAGTSAI RKVEKPDPYF DGVVTKTTLP  420
VFLEQYEATL KGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LVEIYTVTMF QAFQDEIKQL  480
MHVICKEVDR SGSSITYMVS ELIQGKKVDY TVVYNNSDKD VWCICRSFPS RGILCSHALA  540
VLKQENVLML PSKYILSRWR KDFRIHTSSA NTNCTESDRN LGIYDDLYFR GHEYFEDVID  600
IGAREPELKE FVLSAMREAK DRLIRPDDTQ QGDQRVDVNM TVTGPMSTDT RVDVNMASHS  660
SALIQGDRRV DANMASNTPA LVHGDTMTSN ATALIHRDRR VEMKMPTTHL IHGEGRVDMN  720
MTSPHLMQRE RRVDMNMASP HLRRVDMNLA SPHFIHSDRR VDMNLASPHL MHGDRRVDMN  780
MASPHLIQGD TRVDMNMVST SQNGMHTFDL VNVNLESGSL PMTATDFMHM HPHPPVYHPK  840
QLLDMRDQHK TNNLQTLIIA WYSGFQLLTP IQAYRDPSNN ISIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356310.0BT035631.1 Zea mays full-length cDNA clone ZM_BFb0073G01 mRNA, complete cds.
GenBankBT0663680.0BT066368.1 Zea mays full-length cDNA clone ZM_BFc0009K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797820.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A1E5UMH10.0A0A1E5UMH1_9POAL; Uncharacterized protein
STRINGPavir.Ib01075.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-28FAR1-related sequence 6