PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007016.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 274aa    MW: 29280.3 Da    PI: 6.5208
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007016.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-11150198452
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  ++  l
  Do007016.1 150 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 198
                 5999**********************************88887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-14147211IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.795149201IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-12151205No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-14151205No hitNo description
PfamPF001701.1E-9151196IPR004827Basic-leucine zipper domain
CDDcd147035.90E-24152203No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAQLPPRIPA AVHHWPEGGH HGAATAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG  60
AAGEFDRLDD DQLMSMFPDE AGGGASGSSA PGSDNGGSSD SDGDKQRGGA PGSGATGNGC  120
DDERNDATED AQALATGQAL AASTELIRDP KRVKRILANR QSAQRSRVRK LQYISELERS  180
VTTLQNEVSV LSPRVAFLDQ QRTILTVGNS HLKQRIAALA QDKIFKDAHQ EALRKEIERL  240
RQVYEQQNVK MSAGAAASKH GPPPPVRAEK ELMS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391361e-164BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBankBT0872851e-164BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969997.11e-167basic leucine zipper 6
SwissprotQ5JMK61e-117BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLK3XKX31e-166K3XKX3_SETIT; Uncharacterized protein
STRINGSi002546m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.15e-55bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]