PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006820.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 1419aa    MW: 157527 Da    PI: 9.1189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006820.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-144365091084
                 HHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 v +++ l l  +f++++g+ +  ++++tl++   s +sW+v   ++  +++y++++ Wk+F+++n+LkegD+++F +
  Do006820.1 436 VINTSTLALAIDFCNAIGLRE--PFMITLKTsmDSTESWKVHG-HTSEDSSYMISDDWKRFCQENNLKEGDMCTFFV 509
                 5677889999********995..5566666622666******9.5677778************************74 PP
2B347.33.9e-15579660590
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 +++ ++ k+  ++lp  f++++g+  +e+ t+tl++  +s  sW+ ++ +  k + ++ ++GWk+F+++n++kegD+++F +++   +
  Do006820.1 579 EINTSTIKN-VFSLPLAFCKAIGLR-REPCTVTLKTsmSSTTSWQARV-FPYKHCNHLRGSGWKRFCRENKIKEGDVCTFNVVD---T 660
                 556666666.49**********877.466678887733666*******.6666678999*********************9654...3 PP
3B349.48.3e-16120412761793
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                  +l+k+f++++g+ k++++tl++   s  sW+v    +k+ +++v+ +GWk F+++n LkegD+++F++   +e++l+
  Do006820.1 1204 SLSKSFCDAIGLRKPCTITLKVPMNSTSSWQVGGLPCKN-NSFVIVRGWKMFCRENSLKEGDICTFTV---METTLW 1276
                  689**************9999999**********54444.459************************5...445555 PP
4B3361.2e-1113391412175
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
          B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75  
                  ++k++++s++ +++ l+lp  f++++g++k++++tl+   +s  sW+v +   k+ ++yv +  Wk+F+++n++k
  Do006820.1 1339 WIKKEINSNAIEHC-LSLPPAFCNAIGLQKPCTITLKTSMSSTSSWQVLVVPYKNTSHYVRGLDWKRFCEENEIK 1412
                  7899*********9.**************99988888888999*******88999999**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.56E-7188No hitNo description
PROSITE profilePS508639.037191IPR003340B3 DNA binding domain
SMARTSM010190.0064191IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-12593IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-11793IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-7174218IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2251360IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-8307362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-7323368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.274325360IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039427523IPR003340B3 DNA binding domain
SMARTSM010199.3E-5433523IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-15435521IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-8436507No hitNo description
PfamPF023621.7E-11436519IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-13440521IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.828574671IPR003340B3 DNA binding domain
SMARTSM010190.0027576673IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-15578668IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14579668IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-13583666IPR003340B3 DNA binding domain
CDDcd100171.90E-11589655No hitNo description
PROSITE profilePS508638.036695787IPR003340B3 DNA binding domain
SMARTSM010190.0096698787IPR003340B3 DNA binding domain
CDDcd100174.87E-6706785No hitNo description
SuperFamilySSF1019361.96E-9707789IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-9707789IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.31814906IPR003340B3 DNA binding domain
PROSITE profilePS508636.964814906IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-9819908IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-8819908IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-159291031IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-169301031IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1079331029IPR003340B3 DNA binding domain
CDDcd100172.50E-99341026No hitNo description
SMARTSM010198.5E-69361029IPR003340B3 DNA binding domain
PROSITE profilePS5086310.74311881284IPR003340B3 DNA binding domain
SMARTSM010192.8E-411961286IPR003340B3 DNA binding domain
PfamPF023622.8E-1212041279IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1512041283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1512041282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1112041269No hitNo description
SuperFamilySSF1019363.92E-813341412IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-813341412IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-813391412IPR003340B3 DNA binding domain
CDDcd100171.06E-513461412No hitNo description
PROSITE profilePS508638.13413531419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1419 aa     Download sequence    Send to blast
MLSPDSMENM LIPAKFVQHY IPKEHLNNRV AIIFGPLGKI SQVELHMNRL GLFFTGGWSK  60
FLASHSVTAV NDLLLRYESN MVFTVKVFEP DGCQRRSKHN DITMQQYIEE LLEAPSASNL  120
KLCKIELPSS EGEKIPKGSM NPLNKASLWR NSVYEIGPPS WIQKQMNVAA LEKGLALAKA  180
FCDAIGLPKT CTITLKTSIS STKFWPVRGH PCKEKSYLLV QDWSSSPAAS QYHTVTSHRL  240
RPPMSPVMAS SWSCGNRGAA GRKDLRVLLP FTSNSLLIPD ELAGDIAAEE AFVVTPFGKR  300
RVRSVEPIPA KFVQNHIPKG HMNNRGWSQF LAIHGITKDD CLLLRYEGNM TFTVKVFGPS  360
GCQIESKHNG IRMQQISTLP GTEKQQELPS PLQKCKSKND QLCNEEQKKP KASTTSLNKT  420
PFGNYKIGPV SWIKKVINTS TLALAIDFCN AIGLREPFMI TLKTSMDSTE SWKVHGHTSE  480
DSSYMISDDW KRFCQENNLK EGDMCTFFVV EATLWHVVIT RGKEKGTPSA SSSKRKSDND  540
MSISEELKGT NGHINSSNNA SSKRRCAFEI GPRTWMRKEI NTSTIKNVFS LPLAFCKAIG  600
LRREPCTVTL KTSMSSTTSW QARVFPYKHC NHLRGSGWKR FCRENKIKEG DVCTFNVVDT  660
KLWHVVIAHH RRRATQLPPR TPQDMASPGN HGAAARKHLR VLLPFTSDSL RIPDELAGEI  720
SSEEVIIVVP YGRGAVQRVE VGQDGDGAFL GRGWPEFADA CGVGAGWFLV LRHHGAGVLT  780
VKAFDASCCL NSLLKPQQAL ATAFCNAIGL PALSMITLKT STDSPGSWQR IPDELAAEIG  840
AWEALVVVPF GKGKVPRVEV GRDGDGAFLG RGWPEFAAAC GAGAGWLLIL RHHGGGVLTV  900
KVFDASCCLR ELGSPPPAPA VGEAMSSNNS SRRPQFISTL PPDSMENMLI PAKFVQHYIP  960
KEHLNSHMAV VFGPLGKCCQ VELELNQLDV FFAGGWSQFV AFHGITDANS LLLRYEGNMV  1020
FTVKMFGSNG CQGESIHKNI KIQQNIEKQK EAPPASFQKH KSKTDWPSSE TQKISKATLL  1080
TRSIYEIGPP SWIKKVINTY TLEKHLVSTT ISLLDMMKSY IQQEYELKKI LGYGIGDFFF  1140
GNRFLQCNWA AGTLHDHTQD LNEQHQILAE VTFPIVIVTV LLHQPALGVN AKTSIICTSA  1200
PEESLSKSFC DAIGLRKPCT ITLKVPMNST SSWQVGGLPC KNNSFVIVRG WKMFCRENSL  1260
KEGDICTFTV METTLWHVVI THYNKQESPS ASSRKLYHSK SKNDRSSSEG QERPEGSMTY  1320
MKMALPKTTC VFEIRPPAWI KKEINSNAIE HCLSLPPAFC NAIGLQKPCT ITLKTSMSST  1380
SSWQVLVVPY KNTSHYVRGL DWKRFCEENE IKGTGFSIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683933.11e-102putative B3 domain-containing protein Os04g0347400 isoform X4
RefseqXP_022683934.11e-103putative B3 domain-containing protein Os04g0347400 isoform X5
TrEMBLA0A0A9S1931e-116A0A0A9S193_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-10B3 family protein