PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 31314.3 Da PI: 6.0732 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92 | 1.3e-28 | 1 | 155 | 24 | 137 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg................................. 88 ++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Do006751.1 1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPahlraaalpgprfggargdpwdrvvglgfggae 99 9**********************************************9998889999999977777999999999************************ PP TCP 89 ....kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmriknkln 137 + ++++ + s +s + l+++ +s+ a a+++ +r+ r++++m+++++++ Do006751.1 100 gppsATSSASSPLLLSFHSGSVGLDVSPSSSsAAASSDlSRKrRWEQEMQQQQQQQ 155 **963333333777777777777888885551444444678878899998888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-31 | 1 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.552 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG 60 SSFSIPAHLR AAALPGPRFG GARGDPWDRV VGLGFGGAEG PPSATSSASS PLLLSFHSGS 120 VGLDVSPSSS SAAASSDLSR KRRWEQEMQQ QQQQQQQYQQ QMAGYTQSQM PGTVWMVPST 180 NAQAAAAAGG GGESIWTFPQ AASGGGGATV YRGVPSGLHF MNFPAPMALL PGGQQLGLGQ 240 AGGGNDNGSG SGGGEGHMGI LAALNAYRAQ AASDAAAAAQ NGAEGGSSQH HQQHGGGDRQ 300 ESMSPSDDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006751.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965036.1 | 1e-129 | transcription factor TCP15 | ||||
TrEMBL | A0A1E5WKA6 | 0.0 | A0A1E5WKA6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39613.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 6e-27 | TCP family protein |