PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 301aa MW: 32187.5 Da PI: 9.4055 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.8 | 7.7e-31 | 20 | 73 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+a+e LGG++kAtPk il++m+ kgLt++hvkSHLQ+YR Do006411.1 20 PRMRWTADLHRSFVRAIECLGGQDKATPKLILQFMGAKGLTISHVKSHLQMYRA 73 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.471 | 16 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-29 | 16 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-15 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-23 | 20 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGGGGGRNGA VRQYIRSKEP RMRWTADLHR SFVRAIECLG GQDKATPKLI LQFMGAKGLT 60 ISHVKSHLQM YRAARLGAAR RGMQAAAQLQ RRHSCAGDEQ GPKEFLYPPL KRARMGAAAA 120 YESLQQGSHG VSEARTAAAA GSLYCTDDMQ AMAMRRRIKE EGLRWQRRDA AATAAAASNL 180 QSVGCLVQES DPFKISRPEA NHLVLAPNQQ QGSIEDGNGC SLFSSFSIAT VDEPPKQCSL 240 SLSLGLDPNC NRAMASTSPS ESSCILTASP ARRSSSDCSG HSDRFVGPGL SLELSLAMCG 300 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006411.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961920 | 2e-87 | EU961920.1 Zea mays clone 239042 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683888.1 | 1e-178 | protein PHR1-LIKE 3 isoform X2 | ||||
TrEMBL | A0A1E5WF82 | 0.0 | A0A1E5WF82_9POAL; Uncharacterized protein | ||||
STRING | Si011884m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 8e-27 | G2-like family protein |