PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006262.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 305aa    MW: 31491.9 Da    PI: 4.7538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006262.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.1e-3086144259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver++ +p++v++tY+ eHnh+
  Do006262.1  86 TDSWAWRKYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERNRAEPDMVIVTYSFEHNHS 144
                 69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.86180146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-3082144IPR003657WRKY domain
SuperFamilySSF1182905.75E-2583144IPR003657WRKY domain
SMARTSM007744.3E-3585145IPR003657WRKY domain
PfamPF031067.1E-2687143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDGEWSDGAA VSSPTVSGGE GKAGPVRGVP ADECPGSPLS PAAPSTAAAP AASGRRRSAN  60
KRVVNVPLAD VSGPRPKGVG EGNTPTDSWA WRKYGQKPIK GSPFPRAYYR CSSNKGCPAR  120
KQVERNRAEP DMVIVTYSFE HNHSDAVPRA QNRPTPKPKA QPPPPPPEPA ESLSSGSHEV  180
AGVLVATEGG AAAAAAVEVH DDFRWLYDGV SVTSTSPSDV DAADEMLYGT MSFFSAAPPA  240
PLCDEFGDVG GLFDGEGGCE EDAMFAGLGE LPECAMVFRR HGGDGMPMAG GGVKVEQPAE  300
SAAMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1658143376Disease resistance protein RRS1
5w3x_D2e-1658143376Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586181e-134KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.11e-143probable WRKY transcription factor 65
TrEMBLA0A1E5WB240.0A0A1E5WB24_9POAL; Putative WRKY transcription factor 65
STRINGPavir.Ea02968.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-37WRKY DNA-binding protein 65