PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 554aa    MW: 60576.2 Da    PI: 8.1094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006163.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.3e-2176174190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk          +++   + + +rtgC a+l++k+    + ++vt++   HnH+l
  Do006163.1  76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdegavaasSSSPAPRCPDSRTGCLASLTIKLVPsANAFRVTEFIAGHNHQL 173
                 6*****************99997666.****************99998999887755555557899**************9899**************9 PP

        FAR1  90 a 90 
                 a
  Do006163.1 174 A 174
                 7 PP

2FAR171.61.9e-22222321290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                 fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a+++vk++  ++++v+k+  eHnH
  Do006163.1 222 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEsgaivtangvagsAGTPRPGPPPTRTGCQARMVVKMTPCQTYRVAKFFPEHNH 318
                 9*************9976665..899**************9999999*******999876777778899****************************** PP

        FAR1  88 ela 90 
                 +la
  Do006163.1 319 PLA 321
                 *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1976174IPR004330FAR1 DNA binding domain
PfamPF031011.6E-19222321IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSAAEDPSRL SGESSPSSPA SSGSSSPSSG AFDAAAAVAD LALTASTSAA GNDADAHVPT  60
SPYVGMYFET EDDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDEGAVAAS SSSPAPRCPD SRTGCLASLT IKLVPSANAF RVTEFIAGHN HQLASAAAAV  180
SLALLPPSSS HHSIAAAASL PDPRDGPHVD MHFETEEDAY VFYNRYAEHV GFSVRRSYKK  240
RKRGMIVSRI FVCSREGVSD RAKQESGAIV TANGVAGSAG TPRPGPPPTR TGCQARMVVK  300
MTPCQTYRVA KFFPEHNHPL ANPESVHKLR ESEWLSRLFM EKEKWALPYQ RSIFFADILN  360
TLQKDNMITE VKRELSDQED ILQFFKRYEA ILEEHRSKKL HADVDGSQVT LPIPSLRMLK  420
QSSNAYTPEA FKMFQASEAR FNNVCRLASL IASRAAKSEE AMSYIESQSS VLLKHLDDIL  480
QTGYPDMGNH AVPSSSQAIS FVSSQHPDHT TQAGVVAQTT NGTIDNVLTF PTYHHSVLFL  540
MNGIMWVMAG LMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957765.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A1E5WBG30.0A0A1E5WBG3_9POAL; Uncharacterized protein
STRINGPavir.Ba00914.1.p0.0(Panicum virgatum)
STRINGPavir.J10702.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-13FAR1 family protein