PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | FAR1 | ||||||||
Protein Properties | Length: 554aa MW: 60576.2 Da PI: 8.1094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.9 | 1.3e-21 | 76 | 174 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk +++ + + +rtgC a+l++k+ + ++vt++ HnH+l Do006163.1 76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdegavaasSSSPAPRCPDSRTGCLASLTIKLVPsANAFRVTEFIAGHNHQL 173 6*****************99997666.****************99998999887755555557899**************9899**************9 PP FAR1 90 a 90 a Do006163.1 174 A 174 7 PP | |||||||
2 | FAR1 | 71.6 | 1.9e-22 | 222 | 321 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a+++vk++ ++++v+k+ eHnH Do006163.1 222 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEsgaivtangvagsAGTPRPGPPPTRTGCQARMVVKMTPCQTYRVAKFFPEHNH 318 9*************9976665..899**************9999999*******999876777778899****************************** PP FAR1 88 ela 90 +la Do006163.1 319 PLA 321 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-19 | 76 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.6E-19 | 222 | 321 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MSAAEDPSRL SGESSPSSPA SSGSSSPSSG AFDAAAAVAD LALTASTSAA GNDADAHVPT 60 SPYVGMYFET EDDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDEGAVAAS SSSPAPRCPD SRTGCLASLT IKLVPSANAF RVTEFIAGHN HQLASAAAAV 180 SLALLPPSSS HHSIAAAASL PDPRDGPHVD MHFETEEDAY VFYNRYAEHV GFSVRRSYKK 240 RKRGMIVSRI FVCSREGVSD RAKQESGAIV TANGVAGSAG TPRPGPPPTR TGCQARMVVK 300 MTPCQTYRVA KFFPEHNHPL ANPESVHKLR ESEWLSRLFM EKEKWALPYQ RSIFFADILN 360 TLQKDNMITE VKRELSDQED ILQFFKRYEA ILEEHRSKKL HADVDGSQVT LPIPSLRMLK 420 QSSNAYTPEA FKMFQASEAR FNNVCRLASL IASRAAKSEE AMSYIESQSS VLLKHLDDIL 480 QTGYPDMGNH AVPSSSQAIS FVSSQHPDHT TQAGVVAQTT NGTIDNVLTF PTYHHSVLFL 540 MNGIMWVMAG LMEL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006163.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957765.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A1E5WBG3 | 0.0 | A0A1E5WBG3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00914.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Pavir.J10702.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-13 | FAR1 family protein |