PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 26113.8 Da PI: 4.4571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.4e-20 | 37 | 90 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k Do006082.1 37 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 90 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.1 | 9.9e-43 | 36 | 128 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+++++ Do006082.1 36 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRAQVNS 128 69***************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 18.204 | 32 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.42E-19 | 32 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.9E-19 | 35 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.64E-18 | 37 | 93 | No hit | No description |
Pfam | PF00046 | 2.7E-17 | 37 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 38 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.4E-6 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.4E-6 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 92 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAVLGMDDAA RVGKRPFFTT HEELLEEEYY DEQAPEKKRR LTAEQVQLLE RSFEEENKLE 60 PERKTELARR LGMAPRQVAV WFQNRRARWK TKQLETDYDR LKAAYDALAA DHQGLLADND 120 SLRAQVNSLT EKLQGKETSP SATTTAQEVD QQDEHTAASG TEKLLAQQLK DGLLSSGDCN 180 GHGALSSEEE DGGVISDEGC SFDLPDAMLT AIGVTHHGAE EAQLCNWTSW FWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 92 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959701 | 0.0 | EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973433.1 | 1e-152 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 2e-98 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | A0A1E5V1D2 | 1e-171 | A0A1E5V1D2_9POAL; Homeobox-leucine zipper protein HOX5 | ||||
STRING | Si014228m | 1e-152 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-55 | homeobox 1 |
Publications ? help Back to Top | |||
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