PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006075.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 619aa    MW: 65315.1 Da    PI: 9.7544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006075.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-102878446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
       Do006075.1 28 WGTLEELLLACAVTRHGTASWDSVAMEVQtrsplaarPGLTPHSCRLRFRH 78
                     9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-42381IPR009057Homeodomain-like
SMARTSM007173.9E-42482IPR001005SANT/Myb domain
SuperFamilySSF466893.77E-52582IPR009057Homeodomain-like
PfamPF002499.0E-92877IPR001005SANT/Myb domain
PROSITE profilePS500906.2492880IPR017877Myb-like domain
CDDcd001670.001292860No hitNo description
SuperFamilySSF473701.31E-6264356IPR001487Bromodomain
PfamPF004391.5E-5280348IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-6282339IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-6402440IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MADGSDGTDV SPESEATAAA AEKGGEIWGT LEELLLACAV TRHGTASWDS VAMEVQTRSP  60
LAARPGLTPH SCRLRFRHLH RRFSTAGSSG GDEEDEVEED PDASTAEGWV DELRRLRVAE  120
LRRDVERCDL SIGTLQSKVK RLREERERSV SGEATKPDEA SGNDRLSGEE PGRSCRESNS  180
TDLKPPKHPG HQGGGGAKEE EVAKQEASGE SAAASKESSD VRSSASLCRR RQGSVSGKAE  240
EEEAASAPHP PPALSAPLAA LLDAVAAKLG SVLQRLHEHE GEEAASYRTT IRRHVDLEAV  300
RRRLDTSAGS RAEDDDHYPA HELYRDLLLL CTNAVVFFPR RTPEHAAAVE GRALVTGHAS  360
AALRDPKQER ASVGAAPAPA PAGADIVGSL IEKGKPLIVC RKRSSIAKAA RKEESAAKAE  420
ADAAEEEEEE EEEESEDDEK KAVAAATKDK ARGLRTKKGR GGAVRNPSGH GLRPAKGAND  480
DDAATDGAKK GDKKGSGGAA AGGPAKKRNA VDFLKRLNQS PSRKRGSPLG TTRKRSAAAA  540
VEQETTTTRR GRGAGRKEGT GRGGSRRGRG ATGTKRGVGR PLKRGPAPAT PPPSKRAKTT  600
NTRSEKSSGT GKRGGRGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006075.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
TrEMBLA0A1E5UVQ30.0A0A1E5UVQ3_9POAL; Uncharacterized protein
STRINGSi029222m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.18e-14DNA-binding bromodomain-containing protein