PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24188.2 Da PI: 6.509 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 43 | 94 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 y+GVr + rWv+e+r+p + +r++lg++ t+e+Aa+a++ a+ +l+g+ Do005844.1 43 LYRGVRARAGGTRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGA 94 69****9999889****9999.....446*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-22 | 42 | 104 | No hit | No description |
Pfam | PF00847 | 4.1E-11 | 42 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-26 | 43 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-16 | 43 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-25 | 43 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.022 | 43 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MADAEDYSSA SSSSLSPPTS PGHQLPPKRR AGRKKFRETR HPLYRGVRAR AGGTRWVCEV 60 REPQAQARIW LGTYPTPEMA ARAHDVAAIA LRGARAADLN FPDSPHTLPR ARTASPEDIR 120 CAAAQGAELY RPSGGSIHHQ EIVLTTTAAP PPPPPPEPSA WPGTTTTAFL DEDAIFDMPG 180 LIDDMARGMM LTPPAMGKGL ADWSAVDDYD HTHADCTPLW MDY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005844.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727671 | 1e-120 | KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457016.1 | 1e-92 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 5e-85 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 5e-85 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1E5UPN7 | 1e-160 | A0A1E5UPN7_9POAL; Dehydration-responsive element-binding protein 1F | ||||
STRING | Sb03g047170.1 | 4e-92 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-40 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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