PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005686.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 305aa    MW: 33297 Da    PI: 7.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005686.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-092671554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Do005686.1 26 KADREKMRRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQILKDL 71
                678********************997....799*************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1382171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-132391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-52475No hitNo description
PfamPF000103.9E-72671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-72777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-132994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MFPSFIHSQR TECKAQGPTF ARNVQKADRE KMRRDKLNEQ FQELGNTLDP DRPRNDKATI  60
LGDTIQILKD LTSQVNKLKA EYTSLSEEAR ELTQEKNELR DEKASLKSEV DNLNNQYQQR  120
MRVLYPWAGM EPSVVIGPPP AYPYPIPVPI PSGALPMHPQ LQAYPFFRSQ TSGTISNACT  180
PYMAYTQPCH PQPSNQLNSP VAHASSHRSN SPARDCRSKS STPPQASCGV SSSDLGDVAT  240
DLELKTPGSS GPSHSEIANK DSSSDSKTKK QCIKQINGST LTEGTSSSRC SSSGPPDVSN  300
SVGDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005686.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9755130.0EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankHQ8587870.0HQ858787.1 Zea mays clone UT1801 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815621.10.0transcription factor bHLH121 isoform X3
TrEMBLA0A2T7F6850.0A0A2T7F685_9POAL; Uncharacterized protein
STRINGSi017804m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-67bHLH family protein