PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005603.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 319aa    MW: 34787.2 Da    PI: 10.2554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005603.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.73e-1318104186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ +       s ++++ ql+
  Do005603.1  18 CWSEGETAALVDAWGSRYVDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFYGQLD 104
                 7*******************************************999999********************9998775......3577777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-2416104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYVDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDYLVGPT LTGAGGKKPS  120
PPRAALPVFR RRKSPSRSPS PQSPPPLPMA LPLPNYRRGS DLPAANLIHK AAAAAAAAAA  180
ESDSEDGYNN NDYDDDDGSQ QSPSRSVSSR SGGGAAAAPA VGSKRKMSSG SGGFGELARA  240
IETFAEMYER MEASKQRHAE EMERQRIKFL KDLELKRMQA FVDMQLQFAR AKHARKGDAS  300
SEMLMSLAAL PFLSSPAYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278550.0KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-172trihelix transcription factor ASIL2
TrEMBLA0A1E5V2H80.0A0A1E5V2H8_9POAL; Trihelix transcription factor ASIL2
STRINGSb03g030880.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-29sequence-specific DNA binding transcription factors