PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 26167.3 Da PI: 7.9749 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.2 | 2.1e-10 | 140 | 162 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYG+K+vk+s++pr Do005566.1 140 LDDGYKWRKYGKKSVKNSPNPRY 162 59*******************95 PP | |||||||
2 | WRKY | 52.1 | 1.3e-16 | 175 | 215 | 19 | 59 |
SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++ r+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Do005566.1 175 DYYRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 215 678*************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-29 | 127 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-20 | 133 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.178 | 135 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-30 | 140 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-16 | 141 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MHMALASWDS LAADAVFPAM AYRHPCSNGG GLASSGFYGA SSPAAALFPQ PAFGGGAAPG 60 LAPPQQPDAF ECLSDEGVSS VVPGTFGTPP PPPPPRQPRM PAEQVVPDAS SGYTTHVRGA 120 AAMATTDRIA FRVRSEEEVL DDGYKWRKYG KKSVKNSPNP RYNFTFGINA FKLIDYYRNY 180 YRCSTEGCNV KKRVERDKDD PSYVVTMYEG VHNHVSPGTI YYATQDAASG RFFVAGMHQL 240 GH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-19 | 130 | 217 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-19 | 130 | 217 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005566.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058612 | 5e-44 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817958.1 | 1e-105 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1E5W5H3 | 1e-179 | A0A1E5W5H3_9POAL; Putative WRKY transcription factor 50 | ||||
STRING | Pavir.Eb02766.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 3e-34 | WRKY DNA-binding protein 50 |