PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005455.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 346aa    MW: 38366.9 Da    PI: 5.4107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005455.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10161209355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Do005455.1 161 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 209
                 58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-11156213No hitNo description
SuperFamilySSF474591.11E-16156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16158225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8161209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
RGFRNVCVSG QLEMYSGQQS DQGPSANSGR EFSEANWNSV TMHQKMGYNS GPYGFGPYSM  60
GLEERPGLYQ SSSGTFSQNI QMSDEHSGGV KKRKGMDACI TLLQNAGDQQ TEDSSQPERN  120
SMGEGNSKIS PKMQSKEDSS DGDGTKEDYV HVRAKRGQAT NSHSLAERLR RKKISERMKL  180
LQDLVPGCSK ITGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPELGFDI EQILSKQMML  240
SQDRHIAFYG VDPGSSSLAA QFNQGIMQPE MLCNISNTVD VLQGTIHDVS TMNQIPAMWE  300
GLQNLPQMNF NPGVAADSST NNSGIYMTWF HEDRTVSCWY CSETVL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353480.0BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.10.0transcription factor bHLH49
RefseqXP_004981902.10.0transcription factor bHLH49
RefseqXP_022678584.10.0transcription factor bHLH49
TrEMBLA0A1E5V8D90.0A0A1E5V8D9_9POAL; Transcription factor bHLH74 (Fragment)
STRINGSi036685m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-55bHLH family protein