PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005394.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 329aa    MW: 35853.2 Da    PI: 6.9339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005394.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18148197255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa  +++a+k+++g
  Do005394.1 148 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHKYDEAAKAMYG 197
                 59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-13147197IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19148206IPR016177DNA-binding domain
PROSITE profilePS5103221.193148205IPR001471AP2/ERF domain
SMARTSM003803.1E-31148211IPR001471AP2/ERF domain
CDDcd000184.39E-28149207No hitNo description
Gene3DG3DSA:3.30.730.104.9E-29149206IPR001471AP2/ERF domain
PRINTSPR003672.8E-8149160IPR001471AP2/ERF domain
PRINTSPR003672.8E-8171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTPPSAAPIV KPRPSKVSLD DEMPSKAGCT DTIFETEEMP PLHTDTRECV ALRLARAAGG  60
RMGDAGGWKR LRARGVDHAP PPPTARKKRM RRKSTGPDSI DETIKWWKEH NQKVQDESGS  120
SGSRKAPAKG SKKGCMAGKG GPDNGNCAYR GVRQRTWGKW VAEIREPNRG KRLWLGSFPT  180
AVEAAHKYDE AAKAMYGPRA RVNFAENIAD ANSNSGCTSA LSLLASSVPA AAFHGSNEKD  240
GVKSVDTEVH EVKPEVNDDL GSIHVECKSV EALQSEESVS QKEVNVSYDY FNVEEVVEMI  300
IIALNADKKI EVHEECLNGD DDGFSLFAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-14149204662ATERF1
3gcc_A6e-14149204662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327440.0HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.11e-151dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-108DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A1E5UMP90.0A0A1E5UMP9_9POAL; Dehydration-responsive element-binding protein 2A
STRINGSi002067m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-43ERF family protein