PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 28326.1 Da PI: 10.4861 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 122.2 | 4.4e-38 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d+ + +PwdLp a+e e yfFs r+ ++ ++r++ sgyWkatgk+k+v+ + Do005225.1 11 LPPGFRFHPTDEELVVQYLRRKALARPLPA-AVIPVVhDVARRDPWDLP---GASEGEAYFFSLRRAPATGRGGRRRTAGSGYWKATGKEKPVFLQcgt 105 79****************************.8899998***********...3466799*****9888766666677899***************9766 PP NAM 96 kgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ lvg+k+ L+f++ + p+++ +t Wvmheyrl Do005225.1 106 RQLLVGVKTALAFHRSEPPSSSssRTGWVMHEYRL 140 6666**********88766543339********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-46 | 8 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.829 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-24 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKALARPLPA AVIPVVHDVA RRDPWDLPGA 60 SEGEAYFFSL RRAPATGRGG RRRTAGSGYW KATGKEKPVF LQCGTRQLLV GVKTALAFHR 120 SEPPSSSSSR TGWVMHEYRL AVPAGVAVAE QRKNASHDCA VEPGEWVVCR VFLKNRPRNR 180 PSGDVDSKTL RNRASIAHRA VAPLQHREED AGRQQPLPLM LPQPSTSSCV TGVTDMSDQD 240 EVSSSGIKDA PAASQREA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-32 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-32 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017008 | 1e-139 | KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957303.1 | 1e-133 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 8e-51 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A1E5V4X7 | 0.0 | A0A1E5V4X7_9POAL; NAC domain-containing protein 41 | ||||
STRING | Si030942m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 6e-37 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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