PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004747.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 354aa    MW: 37709.2 Da    PI: 6.6973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004747.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09120140526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck+Gd C FaHg
  Do004747.1 120 ACPDFRK-GGCKRGDACEFAHG 140
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.0E-4114144IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159116142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-6119142IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-7120140IPR000571Zinc finger, CCCH-type
SMARTSM0035612150173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258150174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMMMGEGVSV PPWSHHLPVS GVDVGGGDEV EVTPYLLAAL RQYLPCNDAA GLGSADDDEA  60
AAAMAAGVDG FGCDEFRMYE FKVRRCARAR SHDWTECPFA HPGEKARRRD PRKYHYSGTA  120
CPDFRKGGCK RGDACEFAHG VFECWLHPAR YRTQPCKDGT ACRRRVCFFA HTPDQLRVLP  180
PQQTSPRGAG VGASPLADTL MSPPKSPPSE SPPLSPDGAY RRGSWSGVGS PVNEVLASLR  240
QLRLSKANSS PSGGWSGYPA SAVAYGSPTA AGLYSLPSTP MATSTTMGGF MANLEPLDVS  300
FGGGDEEPVQ RVESGRALRD KVFERLSREG AVSGDTSTSG FGGPDVGWVS DLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555850.0BT055585.2 Zea mays full-length cDNA clone ZM_BFc0052C06 mRNA, complete cds.
GenBankBT0852170.0BT085217.2 Zea mays full-length cDNA clone ZM_BFb0336L11 mRNA, complete cds.
GenBankEU9575630.0EU957563.1 Zea mays clone 1597250 mRNA sequence.
GenBankJX4284690.0JX428469.1 Zea mays subsp. mays clone pUT3065 C3H47 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-163C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1E5VG230.0A0A1E5VG23_9POAL; Zinc finger CCCH domain-containing protein 2
STRINGPavir.Eb00253.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-92C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]