PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004599.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 321aa    MW: 33626.7 Da    PI: 7.7553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004599.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.91.3e-25142203159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg +WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H+++
  Do004599.1 142 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqSCHASKQVQRTDGDPLLFDVVYHGSHTCT 203
                 58***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-27127203IPR003657WRKY domain
SuperFamilySSF1182902.22E-24136203IPR003657WRKY domain
PROSITE profilePS5081120.243137200IPR003657WRKY domain
SMARTSM007742.0E-36142204IPR003657WRKY domain
PfamPF031064.7E-24143202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGMSEEKCA LVAELVRMLD MVRQLEAHMA GTGQQQQQGG GGGAAAGGDQ RCRALVWTMR  60
GSIDRAVHMA MSCCADGRRA AGGQLPESPP SGGDGSPRSA GSDQAGDFRG RGNAAGQCKK  120
KKTLPKRRTQ VRVSAVQDVT PLDDGLSWRK YGQKDILGAK YPRAYFRCTH RHTQSCHASK  180
QVQRTDGDPL LFDVVYHGSH TCTQGAAVHP AAASAEHSQA QKPQPAAAAE QTTASPAFES  240
AAGPVLPFSL LSNKPAGADH AAGGATSSPF PGGARVTASP ATPECLVQEL AATTNSPMAM  300
GEMDFMFPLD ADFLENPASY F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21139202568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284191e-130KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969356.11e-151probable WRKY transcription factor 53
TrEMBLA0A1E5WHK80.0A0A1E5WHK8_9POAL; Putative WRKY transcription factor 41
STRINGSi002203m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-35WRKY family protein