PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004342.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 1057aa    MW: 115879 Da    PI: 5.03
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004342.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY802.6e-25114175159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDg+ WrKYGqK+++gs++pr Y+rCt++   gC+++++v++s+ dp+v  i Y geH+++
  Do004342.1 114 MDDGFIWRKYGQKDIHGSKYPRLYFRCTYKddrGCMARRQVQKSEADPSVYLINYFGEHTCR 175
                 59***************************99999**************************96 PP
2WRKY76.62.9e-24428487258
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 +Dg+ WrKYGqK+++gs++pr Y+rCt++   gC ++++v++ + dp+++ itY g+H++
  Do004342.1 428 EDGFIWRKYGQKDIHGSKYPRLYFRCTYKedhGCVARRQVQQWDADPSFFLITYFGDHTC 487
                 7***************************99999*************************98 PP
3WRKY56.36.2e-18916978259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnhe 59 
                 +D ++WrKYG K++ ++e+pr YY+C ++   +Cp+kk v++++++  p ++ +t  +eH+++
  Do004342.1 916 NDRFHWRKYGEKNILNAEYPRLYYKCGYSddhKCPAKKYVQQQSNNsgPPLFMVTLINEHTCN 978
                 79*************************998899*******998765337899********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-24106175IPR003657WRKY domain
PROSITE profilePS5081121.85109172IPR003657WRKY domain
SuperFamilySSF1182903.79E-23110175IPR003657WRKY domain
SMARTSM007742.8E-36114176IPR003657WRKY domain
PfamPF031061.0E-23115175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-23421487IPR003657WRKY domain
PROSITE profilePS5081120.633422485IPR003657WRKY domain
SuperFamilySSF1182902.09E-22423487IPR003657WRKY domain
SMARTSM007747.8E-34427489IPR003657WRKY domain
PfamPF031061.1E-22428487IPR003657WRKY domain
PROSITE profilePS5081114.447910978IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-19910978IPR003657WRKY domain
SuperFamilySSF1182902.22E-18911978IPR003657WRKY domain
SMARTSM007742.7E-28915979IPR003657WRKY domain
PfamPF031064.6E-19916977IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
MAMASAPACA ASELVAKGRE SAAFLRALIG QQPEVGCGAG ATPHGLQDLA EQILLCCDRA  60
LAALGGATED DAAAASRKRK PEHGPPAAPP VVSSKRMRVS GDERATRVEK KQTMDDGFIW  120
RKYGQKDIHG SKYPRLYFRC TYKDDRGCMA RRQVQKSEAD PSVYLINYFG EHTCRRDDDD  180
VVAESPAPFV INFGASTRDG QPSGSPWPSC GDDGLMVSET QTSDLCYSPE EKELRAGMGN  240
EAEVIEQSTP VPEVTSMGSP EWDPLDGCLV WDIGFGESLL DDIVEFTPLD YVVALFEDRE  300
GEEAGKKMAM ASSAPACAAS ELVARGRESA AVLQALLLGQ QPAVGGASAT PHGLRELTDQ  360
ILRCCDRALA ALRHGGTEED ADAAGGIRKR KQERGPGPAA PPATSSKRRR VRGGEMGRTR  420
VEKRQTTEDG FIWRKYGQKD IHGSKYPRLY FRCTYKEDHG CVARRQVQQW DADPSFFLIT  480
YFGDHTCCRE DDEPPAPFVI NFGSSSSDGQ PSGSPWPSSD DDGLVLCKTP GNSPEEVRSA  540
MDNKSELIDL LASVPELTSM SSMEWDLLDG CLDWTLCDGR SPFDIGDEFM GQDFDYLVPV  600
VSSSVEENVA TRQVEDAFPA PAAAGFTELE VTTAGSADAD PQLENLSSGD IEQLKMLQEQ  660
LRGSTVPQLA ARIKELEADL EQEYERHTKT DTEHPEALRS IRNQISKLGE ERNSLFEQNK  720
RLASNFKVSK KVTQNTKEKA RGLLVFHSYF LVRHFLLHFG LQYQLVAMST RLNSAKKPQP  780
PRSSDRRDAA IQELRRGTSL AEQLRQQVEL IPEPDRRHAA VANVGEISIA MESSLSILLQ  840
SEMEHPSCPE LGAVAMAAPA AYSSDGGTGV RNGAVACTRR RVRHRRGRHG APGAQPPISS  900
SILLFSKEIL TEAPENDRFH WRKYGEKNIL NAEYPRLYYK CGYSDDHKCP AKKYVQQQSN  960
NSGPPLFMVT LINEHTCNTL FRDELSSSSS SASQVLDFTN ASLSSPPLMA AAPGLKKEEE  1020
DNISMSMHSY SYDEYLSSLL PSMSADGDQV DFPPGPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21112487669OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388409KRKQERGPGPAAPPATSSKRRR
2406410KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961740.11e-135probable WRKY transcription factor 70
TrEMBLA0A368QGX91e-133A0A368QGX9_SETIT; Uncharacterized protein
STRINGPavir.J07662.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-21WRKY DNA-binding protein 46