PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004212.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 339aa    MW: 37074.5 Da    PI: 6.236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004212.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-071421781147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++++   +G g+Wk I+r++ ++Rt+ q+ s+ qky
       Do004212.1 142 LFLRGLLVFGRGNWKNISRYFVTTRTPLQVSSHAQKY 178
                      688888899***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015571.1E-7141181IPR006447Myb domain, plants
CDDcd001672.59E-4141179No hitNo description
SuperFamilySSF466896.01E-10141184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDPTKSANGE WSASEINIVK SLIARYNASN SYTGDMNKKH TDIVDEVQAM FPLKEKHQVI  60
RLYLDLTVEM MQSGTSDSSY HSMAANGDLV NNTFEIPVEA SSMDNMGMLF GYQAMDMGAM  120
RVAQEAPSRQ PAPRMERMHP RLFLRGLLVF GRGNWKNISR YFVTTRTPLQ VSSHAQKYFK  180
RLENTARRQR YSINDVGLYD GEPWVQNDTS GQEGLPFIGG ASNPSRYGAS GQHTTMSNLA  240
QVQPPVLNHT NQDSNSQVSV GASGQHITMS NLAQVQSPIL NHANQASSSQ VAVGASGQLM  300
GASSSAAPVM EGDGGIQAAW AGDQMGDFFS DPMINMDMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-145uncharacterized protein LOC101759880
TrEMBLA0A1E5W9Z50.0A0A1E5W9Z5_9POAL; Uncharacterized protein
STRINGSi007889m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-11Homeodomain-like transcriptional regulator