PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003967.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 1092aa    MW: 119524 Da    PI: 7.7472
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003967.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.31.8e-14119179363
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e kr  r+ +NRe+A  sRqRKk+++eeLe kvk+++a   +L  +++  + e a+lk+++
  Do003967.1 119 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSTRISCVTAENAALKQQL 179
                 78********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.2E-14116181IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.162119179IPR004827Basic-leucine zipper domain
PfamPF001706.4E-13119179IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-16121179No hitNo description
SuperFamilySSF579599.38E-13121179No hitNo description
CDDcd147042.04E-19122173No hitNo description
Gene3DG3DSA:1.25.40.101.8E-8734801IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.638749783IPR002885Pentatricopeptide repeat
PfamPF138121.7E-5773833IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.043784818IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.3E-4788819IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.097819849IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.108855885IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.8E-88581019IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.377890925IPR002885Pentatricopeptide repeat
PfamPF015351.1893914IPR002885Pentatricopeptide repeat
PfamPF015350.88929954IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.199960994IPR002885Pentatricopeptide repeat
PfamPF015350.42965991IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MGEPTLLAPA AADPFADLPF PEFQPPVDGD NFAFEDFDLE DLDLDVDFDL DLFASDGQLS  60
QPPPLATSSS SAGSPEGGSS SPGAGGDGGL RNEESSESSS RSASGTDGSG KGKGEEDDEA  120
KRRARLVRNR ESAHLSRQRK KQYVEELEGK VKAMQATIAD LSTRISCVTA ENAALKQQLG  180
GAAPPLPMYP ALYPLPMPWM HPAYAMRGSQ VPLVPIPRLK HRQPAPAAAE PPAKKARKTK  240
KVASVSLLGL LCLVMLCGCL IPAVNRMYGS VDAGEGSAFG PSHHGRVLAV EGPRDSVSDS  300
IDPKPPQSAS ETLPALLYLP KNGKHVKING NLVIKSIVAS EKASSRMSGY NGKSPQNQGK  360
EETSLAIPGY VAEAGQVKES TTGMKNKLMA LAPADGTMYM EDDGLLPQWF SEAMSGPLLS  420
SGMCTEVFQF DVSPSSANAN GIVPVYSNAM SNSSQNFTEN LPSHHPHTVK NRRISYSEAI  480
PLRGSTSNDT EHLKTPPKNE SFGNTKPVSS VVVSVLADPR EAGDGNGEGR ISSKSLSRIF  540
VVDLNTDAPA CRRKPAPSRH DMASSSLFAA ARRLLRLGGR GRSGIAPSRA AASSSRSNSA  600
ETRPPPARPP SLQSTLWPLG HPGTLLVPEI ELWAARPGNR LRSVELHRIV KELRKRRRHR  660
QALEVDTLPS RQLPLLLGCW CWLAHAKATI ANKHVIGQHF STVSEWMNLK SHVKFLPKDH  720
AVHLDLIGEI HGVEAAEIYF NNLSDNDKTE KPYGALLNCY TRELLVDKAL AHFQKMKELG  780
FVFSTLPYNN LMCLYTNLGQ HERVPSVMAK MKSNGIIPDN FSYRICINSY GTRADFFGLE  840
NTLEEMECEP QITVDWNTYA VVANNYIKGN LREKAYSALQ KAESKIDKRD ADSYNHLISL  900
YGHLGDKSEV KRLWALQMLN CKRHINKDYT TMLAVLMKLD EITEAEALLK EWESSKNAFD  960
FQVPNVLLTG YRQKDLLDKA EMLLDDFLKK GKKPTSTSWA IVAIGYAEKG NVVKVYELTK  1020
NALCVYAPNS GWIPRPSMIE MILKYLGDEG ELKDVETFVD LLKVAVPMNS DMVEALSRAR  1080
AREEKKVEET NS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1653657RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003967.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9739380.0EU973938.1 Zea mays clone 424664 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8LIB30.0BZP60_ORYSJ; bZIP transcription factor 60
TrEMBLA0A1E5WB670.0A0A1E5WB67_9POAL; Pentatricopeptide repeat-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.12e-59bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oono Y, et al.
    Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide.
    Plant Biotechnol. J., 2010. 8(6): p. 691-718
    [PMID:20331531]
  3. Hu J, et al.
    The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding.
    Plant Physiol., 2011. 156(2): p. 856-72
    [PMID:21487048]
  4. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  5. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  6. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]