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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do003946.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
C2H2 |
| Protein Properties |
Length: 515aa MW: 54393.5 Da PI: 7.9203 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do003946.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.9 | 4.6e-07 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Do003946.1 204 HYCQVCGKGFKRDANLRMHMRAH 226
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 515 aa
Download sequence Send
to blast |
MIGGGGNPYF LQNHHHQLFH HALDGMDGGS AGFMEPPASN SADAHCHALL YNLSLLRDKV 60
QQLQPLVGLA VAHDGPGPAG AVSSAGAVIQ EIITAASSMM YAFQQLCSHG GAQSSTAVAH 120
AKNGIADAAC GDPQQAAVMD HVMQQQWQQH HHGGYDNRVV HTKTAVAAAT VPSSSQPTTV 180
ATAEEEAGTI IELDAQELLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALANPA 240
KAGGGDAAAA TTTSSSSSRS FYSCPQEGCR WNRKHAKFQP LKSVICAKNH YKRSHCPKMY 300
VCNRCNRKHF SVLSDLRTHE KHCGDHRWLC SCGTSFSRKD KLIGHLGLFT GHQPAVPLDR 360
QANGKRSSSS RSTPQLVFSA PDTARRPLLP PQARRLCSAP PSPPLPCAAV TQSHEAVTAG 420
LRATLDQLLL SPCAAVVGDG EAEDAQSCCF EAPAANADAA SKPAAPSCRS CGGGDACVLL 480
LPCQHLCLCL SCEAAMDACP VCAATKNASL HVLFS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 1e-117 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 1e-117 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 1e-117 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 1e-117 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-117 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
