PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 166aa MW: 19014.5 Da PI: 7.5006 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.8 | 3.5e-22 | 12 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdk 90 lp+G+rF Pt el+++yL+ v+ e e ++ +d+y+++P +L + ++ +++ +wyf + ++ k+ + g+r nr + g W+ +gk Do003940.1 12 LPVGYRFTPTPRELIHYYLNTWVTCPGerpfGEPEGIVCAADVYSADPGTLTSrlrHFGHDDGNWYFLCVTRWKAGNvGTRMNRtVQGGGKWHGSGKRI 110 799*******************9876655542223467788**********853445555777*******99999877******5555899**999977 PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v + g ++t+ + + g k++W+m+e+r Do003940.1 111 KVRR---WPYGYRQTFEYR---DAGGDKCTWLMEEFRS 142 7766...89********95...78899*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-24 | 5 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.998 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 13 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEMEENGRWP DLPVGYRFTP TPRELIHYYL NTWVTCPGER PFGEPEGIVC AADVYSADPG 60 TLTSRLRHFG HDDGNWYFLC VTRWKAGNVG TRMNRTVQGG GKWHGSGKRI KVRRWPYGYR 120 QTFEYRDAGG DKCTWLMEEF RSALPEATDG EGIKMVPADP LSLIHI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826981.1 | 5e-82 | NAC domain-containing protein 30-like | ||||
TrEMBL | A0A1E5VXB2 | 2e-98 | A0A1E5VXB2_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Hb01963.1.p | 7e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 7e-13 | NAC domain containing protein 96 |