PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 17993.3 Da PI: 8.9191 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.1e-12 | 86 | 126 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq Do003563.1 86 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 126 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-15 | 73 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-15 | 74 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.472 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-10 | 85 | 130 | No hit | No description |
Pfam | PF00010 | 2.3E-9 | 86 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
LIDGCRKESK NSNKKPRNIA PVLRTLSSSA LDDETNTELI NNSSSWCCSS EDDSIGVCEE 60 SVVLKQSSSS RGRSRSSKNS QSLYAKKRRE RINEKLKTLQ QLIPNGTKVD MSTMLEEAVQ 120 YVKFLQLQIK LLSSDETWMY APLAYNHMSI DINLNSAAKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003563.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826894.1 | 2e-83 | transcription factor bHLH139-like isoform X1 | ||||
Refseq | XP_025826895.1 | 5e-84 | transcription factor bHLH54-like isoform X2 | ||||
Refseq | XP_025826896.1 | 5e-84 | transcription factor bHLH54-like isoform X2 | ||||
Refseq | XP_025826897.1 | 5e-84 | transcription factor bHLH54-like isoform X2 | ||||
Swissprot | Q7XHI9 | 2e-39 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A1E5V4V3 | 1e-112 | A0A1E5V4V3_9POAL; Transcription factor bHLH84 (Fragment) | ||||
STRING | Si028242m | 8e-82 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-37 | bHLH family protein |