PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003054.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 147aa    MW: 15435.2 Da    PI: 9.3578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003054.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19102146250
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+
  Do003054.1 102 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDQAA 146
                 7********.**********7.....337*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-17102147IPR016177DNA-binding domain
PfamPF008471.5E-13102146IPR001471AP2/ERF domain
SMARTSM003808.3E-19102147IPR001471AP2/ERF domain
PROSITE profilePS5103222.405102147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-25102147IPR001471AP2/ERF domain
PRINTSPR003672.2E-12103114IPR001471AP2/ERF domain
PRINTSPR003672.2E-12125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLSGYERTRE ASMMVDALAR VIAGGAPPMA AAGARHREVV SPAAGAWPGY DYDALSPPAY  60
EYGAAATPAQ HSPATTATAS AGPNEQIPSP SSAESGGGPR RRYRGVRQRP WGKWAAEIRD  120
PHKAARVWLG TFDTAEAAAR AYDQAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171021461459Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620611e-40AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827506.15e-41ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1E5UZQ41e-97A0A1E5UZQ4_9POAL; Uncharacterized protein (Fragment)
STRINGOPUNC12G04190.17e-35(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-09ethylene response factor 110