PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002899.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 516aa    MW: 55371.3 Da    PI: 8.011
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002899.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43e-28115173259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rsaed+ +++ tYegeH h 
  Do002899.1 115 KDGYQWRKYGQKVTRDNPYPRAYFRCAYApSCPVKKKVQRSAEDKLMLVATYEGEHIHA 173
                 8***************************99**************************996 PP
2WRKY91.75.5e-29358417159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  Do002899.1 358 VKDGYHWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSVLVATYEGEHNHP 417
                 58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.626109175IPR003657WRKY domain
SuperFamilySSF1182903.53E-24110173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-27110173IPR003657WRKY domain
SMARTSM007745.6E-34114174IPR003657WRKY domain
PfamPF031061.8E-23115172IPR003657WRKY domain
PROSITE profilePS5081127.232353419IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-28354419IPR003657WRKY domain
SuperFamilySSF1182906.54E-25355419IPR003657WRKY domain
SMARTSM007741.1E-33358418IPR003657WRKY domain
PfamPF031067.5E-24359417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MLVMDSNGEC SSPTGSAAAG LLPLFGPSPA AESLEEKLRR VSEENRRLAG ALDAILADRP  60
HLRALATSPT PSCHANAAAP ATEVAATGVT AEPRPKVRTV CARAEPLDAD ANHLKDGYQW  120
RKYGQKVTRD NPYPRAYFRC AYAPSCPVKK KVQRSAEDKL MLVATYEGEH IHALQRRTRR  180
APMLLMDSPR RAGCSPVCLD LSVGLSPSPP EMGAEMAAEP ERPDLPAAGG CRTASSMTDE  240
QAKTLEAKFT QVSEENRRLT EMIAYLYASQ IARPSPDASD SPRASQSASP PPAAASRKRS  300
GDSLEPSNSG DANGSSKAEA AQHAAESPLS DDYEGSCRRI KVSRVCTRID PSDTTLIVKD  360
GYHWRKYGQK VTRDNPSPRA YFRCAFAPSC PVKKKVQRSA EDSSVLVATY EGEHNHPCPT  420
SAGELPGCAT RSGSVPCSIS INSSGPTITL DLTKNRGGGV RVMEAAEAPD VKKLCQEIAS  480
PEFRTALAEQ MASSLTRDSN FTEALATAIL RQVPDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191144191374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002899.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353041e-107BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds.
GenBankBT0684931e-107BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds.
GenBankEU5187721e-107EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds.
GenBankKJ7268101e-107KJ726810.1 Zea mays clone pUT3166 WRKY transcription factor (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956831.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK51e-128WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A1E5UTC40.0A0A1E5UTC4_9POAL; Putative WRKY transcription factor 40
STRINGSi030429m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-51WRKY DNA-binding protein 40