PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002854.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 344aa    MW: 35822 Da    PI: 6.7158
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002854.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.5e-33141198259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Do002854.1 141 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 198
                 8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33125199IPR003657WRKY domain
SuperFamilySSF1182902.75E-28132198IPR003657WRKY domain
PROSITE profilePS5081129.861135200IPR003657WRKY domain
SMARTSM007748.6E-39140199IPR003657WRKY domain
PfamPF031065.0E-26141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGAAGEAGV VGGGEWPFSA DAYADSSAIF AELGCWAAGL DGAGGAELVL PALEPPEDKD  60
YTLPPLPLSE PAGSVSVDGG ASSSSTDDGA VQEDAADGNP AAATEAASKP PAPGKTGKSG  120
QKRARQPRFA FMTKSDIDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTNSK CTVKKRVERS  180
SDDPSVVITT YEGQHCHHTI TFPRAHLHAA LAAAHMGSFS AAAHHHLYST TNDMMNLPPL  240
HLPTAAAAAA AHQQQINNDP LACRPAASMS PSSLLRPLHH CNGQELLAAT YPAATLSSST  300
MTMPAASSVV VSTHQSPSSP ARSAPVPVDK GLLDDMVPPA MRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25130197774Probable WRKY transcription factor 4
2lex_A4e-25130197774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418598e-84AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803236.11e-128probable WRKY transcription factor 48
TrEMBLA0A1E5VGB70.0A0A1E5VGB7_9POAL; Putative WRKY transcription factor 57
STRINGPavir.Bb00073.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-54WRKY DNA-binding protein 57