PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002628.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 173aa MW: 19007.2 Da PI: 9.4614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002628.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.1	4.1e-07	8	30	2	24
NAM 2 ppGfrFhPtdeelvveyLkkkve 24 ppGf+F P+de+lvv++L++k+ Do002628.1 8 PPGFHFFPSDEDLVVHFLRRKLL 30 9*******************986 PP
2	NAM	59.4	1.2e-18	38	104	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++wyfFs++++ +r+ +gyW+ g d++v+s +g vglkktL+f +g+ +kg kt+W+mhey+l Do002628.1 38 QAGNQWYFFSHAAQ--------SRTSPNGYWNPIGADETVTS-NGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 104 35689***9865........678899**********.999***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.695	1	128	IPR003441	NAC domain
SuperFamily	SSF101941	7.72E-34	4	109	IPR003441	NAC domain
Pfam	PF02365	2.0E-20	8	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGATNIPPG FHFFPSDEDL VVHFLRRKLL ILQGTALQAG NQWYFFSHAA QSRTSPNGYW 60 NPIGADETVT SNGCIVGLKK TLIFCTGEPS KGFKTNWIMH EYHLQDEGYN VSGSSTSSSS 120 SSSRKSQRKR VHSSTVSDIA YPVASQQSAA YTHVTTKWCT KPINNLCRSP TTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	6	104	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	6	104	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	6	104	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	6	104	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-22	6	104	19	145	NAC domain-containing protein 19
3swm_B	2e-22	6	104	19	145	NAC domain-containing protein 19
3swm_C	2e-22	6	104	19	145	NAC domain-containing protein 19
3swm_D	2e-22	6	104	19	145	NAC domain-containing protein 19
3swp_A	2e-22	6	104	19	145	NAC domain-containing protein 19
3swp_B	2e-22	6	104	19	145	NAC domain-containing protein 19
3swp_C	2e-22	6	104	19	145	NAC domain-containing protein 19
3swp_D	2e-22	6	104	19	145	NAC domain-containing protein 19
4dul_A	2e-22	6	104	16	142	NAC domain-containing protein 19
4dul_B	2e-22	6	104	16	142	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002628.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952810.1	2e-75	NAC domain-containing protein 104
Swissprot	Q8GWK6	2e-24	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1E5VI72	1e-127	A0A1E5VI72_9POAL; Uncharacterized protein
STRING	Si018368m	9e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-26	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]