PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002551.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 291aa    MW: 31441.9 Da    PI: 9.8388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002551.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11158205455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Do002551.1 158 SHSLAERARREKISERMTVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 205
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-10152209No hitNo description
SuperFamilySSF474592.62E-18152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.202154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-19154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDPASSSVVA AELLRPPHHH HHHFASAAPG PHHEASSVVT TAGDRSNARR SGGGSSSRRR  60
PRRDATAAAA PPEEEPSKLA STSGTAASGS GGGQDSADPE PKRVKQMASS ENNDKIRTEA  120
ETNSGNARKA VDKKPAPPEP SKQDYIHVRA RRGQATDSHS LAERARREKI SERMTVLQDL  180
VPGCNKVIGK ASVLDEIINY IQSLQRQVEF LSMKLEAVNA HMNNATVSFP SKDVSSMRFT  240
SATILQFGAP APPYNTAPGL TFDRQTPREY PQALTSDWLH MQIGNAYERV T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105PEPKRVKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955736.11e-124transcription factor BHLH094
SwissprotQ69WS31e-110BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1E5VEN60.0A0A1E5VEN6_9POAL; Transcription factor BPE
STRINGPavir.Bb00642.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-62BIG PETAL P