PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002283.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 402aa    MW: 43296.1 Da    PI: 10.1446
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002283.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_161.51.7e-19295357163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elk+++rkq+NRe+ArrsR+RK+ae ee ++ ++ L++eN++Lk+el++l+++++ l+se+
  Do002283.1 295 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANSADLLKQENSSLKEELKQLQEKCDGLTSEN 357
                 89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.2E-271100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.6E-13139263No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-16290354No hitNo description
PfamPF001702.9E-17295357IPR004827Basic-leucine zipper domain
SMARTSM003383.3E-19295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047297360IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-10298354No hitNo description
CDDcd147021.03E-19300351No hitNo description
PROSITE patternPS000360302317IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAAGTPPV TPPAFFHSSV  60
APSPQGHPYM WGPQMMPYGT PPPYAAMYTQ GTPYQQAPMP PGSHPYNPYS LQSPNGTVQT  120
PTSGAGGTET DKSSKNKRKT HLKRSKGSLG SLDAVAAKNI KSPAKPSASC SNEGSSQSES  180
GSGSSSEGSS TNSKSGSRAK DSSERRQGND SRNRGTQSST VEPTQPSSGP VVLNPMMPFW  240
PVPPPMGGPA TALGVDYWGA PASVPVHGKV IAAPTSAPSS NSRDIVLSDP AIQDERELKK  300
QKRKQSNRES ARRSRLRKQA EWEEVANSAD LLKQENSSLK EELKQLQEKC DGLTSENSSL  360
HVSSLLFLFC SFQKRSLKRL KMRNQMEIGT KIKGWNFSLS DC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KRKTH
2311317RRSRLRK
3311318RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665280.0BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds.
GenBankJX4699240.0JX469924.1 Zea mays subsp. mays clone UT3180 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795520.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_025795521.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B22e-78BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1E5UWN60.0A0A1E5UWN6_9POAL; BZIP transcription factor 16
STRINGPavir.Ib00998.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-65basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]