PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 288aa MW: 31423.3 Da PI: 6.0302 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C+la+yfp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+ P +G+v +i+ lqq+++q++ +l ++++ Do002250.1 12 ACAACKYQRRRCTPECPLAEYFPHDRPRVFRNAHRLFGVSNILKTLARAGPEKRREAMHCIIYESQAWDIYPASGCVPIIHGLQQRIRQAELDLRSVHA 110 7******************************************************************************************99999887 PP DUF260 100 e 100 + Do002250.1 111 N 111 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.705 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-34 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAAPGGGGAG AACAACKYQR RRCTPECPLA EYFPHDRPRV FRNAHRLFGV SNILKTLARA 60 GPEKRREAMH CIIYESQAWD IYPASGCVPI IHGLQQRIRQ AELDLRSVHA NIQAYRAAQG 120 RDVPELDGDS FGAASPPAPP TSFQFQPAAG NNDNAGGGGL SFFYGGDLMN AATSNDDNIA 180 TETSIAPLQM PSWIMQTPHY NMKNTAAAAN VVGKLVPQPS HDYRFLVDAT MVQHQPQQPI 240 PMQPAELDDE MSYFVEDGDN EMLHESSMNT SENKAMKAPK MEDANGFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-24 | 2 | 124 | 1 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-24 | 2 | 124 | 1 | 123 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-45 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 1e-121 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A1E5UTR9 | 0.0 | A0A1E5UTR9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35697.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-26 | LOB domain-containing protein 27 |