PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002225.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 578aa    MW: 65912.5 Da    PI: 7.2339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002225.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.3e-161771799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ++p kf+++++gk   +k l l+ +sg++W v +  +k++++ +l+ GW++Fvk  +L+e+D ++F+ +g+s+f   v +f++
  Do002225.1  1 IIPEKFVKNFNGKI--NKGLDLKVPSGETWHVGV--DKSRDELFLAFGWEDFVKVYELQENDLLIFTCSGNSSF--DVLIFDA 77
                59*****9888774..456***************..*******************************9999999..9999886 PP
2B353.25.3e-17250341198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfr 98 
                 ffk +     +++g +++p kfa++++ + +e+  l l+ +sg++W v +   k++++ +l +GW+eFvka++Lke+D ++F+ +  r ++++ + +f+
  Do002225.1 250 FFKLM--TGDFARG-ISIPAKFAKNINVQIAEG--LDLKVPSGETWYVGV--YKRGNELLLMTGWEEFVKAHELKENDLLIFTCSlCRCNTSFEILIFE 341
                 55655..4555665.9*******9997665665..99*************..9999999999*********************6655566666777765 PP
3B345.51.3e-14474569499
                 E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 vl +s++ ++ + lv+p +fa++h ++  ++++++l+ +s   +W v++ y+ + ++   l+    +Fv++n+L+egD+++F+l++  ++ ++ v+v+r
  Do002225.1 474 VLQKSHHQRRsNFLVVPSRFAADHLQE--RTQEIVLRRPSRkDKWFVRYYYTSYTRGfQNLQ--FFNFVHDNKLREGDVCIFELIKGaKRVTMAVHVVR 568
                 55555555544889**********544..5569*****66648******8866666635555..899******************887********998 PP

                 S CS
          B3  99 k 99 
                 k
  Do002225.1 569 K 569
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.07E-15176No hitNo description
SuperFamilySSF1019363.53E-17180IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0098178IPR003340B3 DNA binding domain
PfamPF023624.4E-12177IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18200222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-18244345IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731247343IPR003340B3 DNA binding domain
CDDcd100176.88E-17249340No hitNo description
SMARTSM010198.9E-9250343IPR003340B3 DNA binding domain
PfamPF023623.8E-14250340IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18263345IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-20463568IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18464568IPR015300DNA-binding pseudobarrel domain
CDDcd100174.43E-15469568No hitNo description
SMARTSM010191.6E-11471570IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096472570IPR003340B3 DNA binding domain
PfamPF023621.7E-12472569IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
IIPEKFVKNF NGKINKGLDL KVPSGETWHV GVDKSRDELF LAFGWEDFVK VYELQENDLL  60
IFTCSGNSSF DVLIFDANGC VKLSSPFGNR IGPNVGKRFD AVGGQHADHY SLSDSDNISM  120
PSQMVGSPHK ASSSKRSSGK TKPRKEPAFP NSSSYLVKHE SMEEDEGDER CGDSEYYYSK  180
VANRLTYEEK EEILTLASIR PDNPAFVIVL QKTSVQRVNN FLMVEKGCAS CREWQEHCYW  240
ENMDASKIRF FKLMTGDFAR GISIPAKFAK NINVQIAEGL DLKVPSGETW YVGVYKRGNE  300
LLLMTGWEEF VKAHELKEND LLIFTCSLCR CNTSFEILIF EASGCEKLSS LFASRFGPSM  360
RKHLNGIEGQ HAEPYTLTDS EEASVPPQLF GSTNMASTSK KHNCKTKPRK EPQSLNSSGY  420
HVKHEAIEEE ESDYRYADSK FYYSRTANQL TEEEKENILS LASIQPENPA FVAVLQKSHH  480
QRRSNFLVVP SRFAADHLQE RTQEIVLRRP SRKDKWFVRY YYTSYTRGFQ NLQFFNFVHD  540
NKLREGDVCI FELIKGAKRV TMAVHVVRKV GDWFVLVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-136Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP50.0A0A2T7EIP5_9POAL; Uncharacterized protein
STRINGSi024966m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein