PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002016.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 415aa    MW: 46301.7 Da    PI: 7.7826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002016.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000391113323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+  +Cgk+F + s L++H  +H
  Do002016.1  91 CSyeNCGKTFVDVSALRKHAHVH 113
                 77779**************9887 PP
2zf-C2H2171.6e-05279304123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y+Cp   C+k + +++ L+ H++t H
  Do002016.1 279 YVCPyeGCDKAYIHSYKLNLHLKTqH 304
                 99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-684127No hitNo description
Gene3DG3DSA:3.30.160.601.1E-1284113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01389113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.84389118IPR007087Zinc finger, C2H2
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SMARTSM00355220156177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-10167194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.05E-6167197No hitNo description
SMARTSM0035573183207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.91E-6272304No hitNo description
Gene3DG3DSA:3.30.160.607.1E-10275304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.85279312IPR007087Zinc finger, C2H2
SMARTSM003550.0036279304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEYPAAAAGS GGYKYYYPPQ HSQPQPARRP PRPAVRWVKQ WIPQDLASSG GKCSLFKWVR  60
EDGHRSSKEN TKVLEVEAPK PEPTTEILFL CSYENCGKTF VDVSALRKHA HVHNEKQYIC  120
NEPNCGKVSP LGTNITATFS FFAVEFMLFS VDPKLPSCSI LQKFVDSSKL KRHHLTHTGQ  180
KDFVCPHPGC GKVITSSLSS NALMRYHGIL MHCGSFAFNH QTCTLSFPSY RYLYHSLRSM  240
SYLMTGTPVA VQHTPPAEKP HSAPKPSTPA TTSFADRPYV CPYEGCDKAY IHSYKLNLHL  300
KTQHPEHGQE ENGKLGASAG QHGVNEPTYQ YNYAEIGDIA LHPKRSKHKS HSSKGYSAKI  360
SSAVHSKISG VKNQWSGKAT YEDDSEETEE DGGNNIDDGW RYGNNADDEE TQDED
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0371601e-126BT037160.1 Zea mays full-length cDNA clone ZM_BFb0157B04 mRNA, complete cds.
GenBankEU9677951e-126EU967795.1 Zea mays clone 306139 mRNA sequence.
GenBankKJ7277631e-126KJ727763.1 Zea mays clone pUT5709 C2H2 transcription factor (C2H4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960546.10.0zinc finger transcription factor YY1
TrEMBLA0A1E5V0A60.0A0A1E5V0A6_9POAL; Putative zinc finger protein
STRINGSi022363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.17e-67C2H2 family protein